PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G237100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 355aa    MW: 38771.5 Da    PI: 6.5828
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G237100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEde+l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  Brast03G237100.1.p 14 KGPWTSEEDEKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding48.71.7e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ +E++ +++++++lG++ W++Ia ++  +Rt++++k++w+++l
  Brast03G237100.1.p  67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLT-RRTDNEIKNYWNTHL 112
                         89********************.********9.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.042961IPR017930Myb domain
SuperFamilySSF466891.06E-2811108IPR009057Homeodomain-like
SMARTSM007172.4E-131363IPR001005SANT/Myb domain
PfamPF002498.3E-161461IPR001005SANT/Myb domain
CDDcd001674.32E-111661No hitNo description
PROSITE profilePS5129423.7962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2465116IPR009057Homeodomain-like
SMARTSM007174.4E-1566114IPR001005SANT/Myb domain
PfamPF002497.8E-1567112IPR001005SANT/Myb domain
CDDcd001673.17E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGRSPCCDKI GLKKGPWTSE EDEKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRSDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLTRRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKATN GALIGTADVK SAKAAASLSH MAQWESARLE AEGRLAQESK MRTSASTKTS  180
LHPQPMNPSA SAASPCLDVL HAWQGAGIDL ESPTSTLTFT GSNSGMLPIQ VTTSLGISKS  240
NSTMWQQTSD ELEGEESEWK FLSKQQLEGK ERGLDIIGCE QPWFTGMVGV GAGFTDMLLD  300
GSSMHDTSEC WGESSNGQAE HSNQVSGDGE SETYWSGILG MVNSELQPQP PPLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G237100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574525.10.0transcription factor MYB106 isoform X1
SwissprotQ9LE631e-106MY106_ARATH; Transcription factor MYB106
TrEMBLI1I7B60.0I1I7B6_BRADI; Uncharacterized protein
STRINGBRADI3G36660.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-105myb domain protein 106