PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G236600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 359aa    MW: 37951.3 Da    PI: 5.4466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G236600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.7e-15142188354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L +++e++k+L
  Brast03G236600.1.p 142 RSHSEAERRRRQRINSHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 188
                         78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.288139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-12142188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.77E-14142191No hitNo description
Gene3DG3DSA:4.10.280.107.9E-15143196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15143197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.85E-6237287No hitNo description
Gene3DG3DSA:3.30.70.2602.5E-7237291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MWEGAAGAVH GSHEALLLQG DRSIDHGQYP SAGLLPWQQL GPSSAGPSYM IPPAPFGAEI  60
PESFGVDAGF GGLQQLQGQG QQHQYGAGLF GLEQPTAPQQ LQLHGAPSSR MMVSGLLGSL  120
QAELGRMTAK EIMDAKALAA SRSHSEAERR RRQRINSHLA RLRSLLPNTT KTDKASLLAE  180
VIEHVKELKR QTSAIMAVSA SGEEDAAPAV QQLPTEADEL AVDAADEDDG RLVVRASLCC  240
EDRPGLIPDM ARALAALRLR ARRAEIATLG GRVRNVLLIT AAAEDDDEED EEGDERAAAA  300
AAGSHRRHEL VASIQEALRG VMDRKAGESS DTNNTSSSGG GGSIKRQRVN GAREQGSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G236600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572226.11e-147transcription factor AIG1
SwissprotQ9S7Y16e-64BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0Q3FJR71e-146A0A0Q3FJR7_BRADI; Uncharacterized protein
STRINGBRADI3G36610.11e-144(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]