PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G213800.4.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 458aa    MW: 50811.9 Da    PI: 8.6042
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G213800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.1e-14104142341
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         +k+C+Ck+skClk+YC+Cfa+g++C+++C+C++C+N+ +
  Brast03G213800.4.p 104 RKNCKCKNSKCLKLYCDCFASGRYCNDDCNCKNCCNNVS 142
                         799*********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-11102143IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163417.386103182IPR005172CRC domain
PfamPF036386.2E-10105140IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAYRNHWEAS YAIPTPPPAK KLQVRRRSPV LLQDSPLPAA KLPLSGVQVQ RPLQQVSPVL  60
TQLLPNIEVP ILLPTHATSV GVMLNSRYPW SETSSESIYG TPRRKNCKCK NSKCLKLYCD  120
CFASGRYCND DCNCKNCCNN VSHETARQDA INAVMERNPV AFMPKIGNIP RHAPQNPENC  180
KCTDCKNYES SEDRKEIRRI TLQHGVYVQH VQNLASKGMI GPSAVLPRAA EKFSGLSVAS  240
LGRDQPIHDN DSSQVLSPLV TYVPTEDTIS PVKLGPHGVT YRTLLADIIQ IEDVNVLCKV  300
LVLVSRQAAG ALLDSGVVED NNIRKLDRGE SRIPSTNHGR KAVQKQHDEQ VCSLENSLIA  360
VPLSEGRAGI PRSDPSDRWK DNRRPVSPGT QALMCNEQDM FFQTSSVAGA ILSTTKENLS  420
ESYKEQEKCV LTNLRDFLRE LAKSGRLQEE KRSLRCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1210419711130Protein lin-54 homolog
5fd3_B1e-1210419711130Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G213800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.10.0protein tesmin/TSO1-like CXC 7 isoform X1
TrEMBLI1I6L50.0I1I6L5_BRADI; Uncharacterized protein
STRINGBRADI3G34670.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-31Tesmin/TSO1-like CXC domain-containing protein