PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G213800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CPP | ||||||||
Protein Properties | Length: 497aa MW: 55172.1 Da PI: 8.6396 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.7 | 1.3e-14 | 104 | 142 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+C+Ck+skClk+YC+Cfa+g++C+++C+C++C+N+ + Brast03G213800.3.p 104 RKNCKCKNSKCLKLYCDCFASGRYCNDDCNCKNCCNNVS 142 799*********************************976 PP | |||||||
2 | TCR | 50.3 | 4.7e-16 | 189 | 229 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ck+s+ClkkYCeCf++++ Cs++CkC+dCkN e+ Brast03G213800.3.p 189 KHTKGCHCKRSECLKKYCECFQSNVLCSQNCKCTDCKNYES 229 589***********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.0E-11 | 102 | 143 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.98 | 103 | 229 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.9E-10 | 105 | 140 | IPR005172 | CRC domain |
SMART | SM01114 | 7.2E-18 | 189 | 230 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.1E-12 | 192 | 227 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MAYRNHWEAS YAIPTPPPAK KLQVRRRSPV LLQDSPLPAA KLPLSGVQVQ RPLQQVSPVL 60 TQLLPNIEVP ILLPTHATSV GVMLNSRYPW SETSSESIYG TPRRKNCKCK NSKCLKLYCD 120 CFASGRYCND DCNCKNCCNN VSHETARQDA INAVMERNPV AFMPKIGNIP RHAPQNPEYK 180 AAEGPLVGKH TKGCHCKRSE CLKKYCECFQ SNVLCSQNCK CTDCKNYESS EDRKEIRRIT 240 LQHGVYVQHV QNLASKGMIG PSAVLPRAAE KFSGLSVASL GRDQPIHDND SSQVLSPLVT 300 YVPTEDTISP VKLGPHGVTY RTLLADIIQI EDVNVLCKVL VLVSRQAAGA LLDSGVVEDN 360 NIRKLDRGES RIPSTNHGRK AVQKQHDEQV CSLENSLIAV PLSEGRAGIP RSDPSDRWKD 420 NRRPVSPGTQ ALMCNEQDMF FQTSSVAGAI LSTTKENLSE SYKEQEKCVL TNLRDFLREL 480 AKSGRLQEEK RSLRCH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-28 | 104 | 243 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-28 | 104 | 243 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G213800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235073.1 | 0.0 | protein tesmin/TSO1-like CXC 7 isoform X1 | ||||
Refseq | XP_014755713.1 | 0.0 | protein tesmin/TSO1-like CXC 7 isoform X1 | ||||
TrEMBL | I1I6L5 | 0.0 | I1I6L5_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G34670.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 2e-58 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G213800.3.p |