PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G213800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 498aa    MW: 55483.3 Da    PI: 8.4578
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G213800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.71.3e-14144182341
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         +k+C+Ck+skClk+YC+Cfa+g++C+++C+C++C+N+ +
  Brast03G213800.2.p 144 RKNCKCKNSKCLKLYCDCFASGRYCNDDCNCKNCCNNVS 182
                         799*********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-11142183IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163417.386143222IPR005172CRC domain
PfamPF036386.9E-10145180IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDKPPNVPRD SVQLDFASAF YAGKPEIAAT AAALSHALGP PRLPTHHQLM PLKVNVQSSL  60
PPWPPVLWPT AITGKHPMPS LLHLQLRSCR CVDVHLYCCK IHHCRLQNYH YQGCRCSAHC  120
NRMLNSRYPW SETSSESIYG TPRRKNCKCK NSKCLKLYCD CFASGRYCND DCNCKNCCNN  180
VSHETARQDA INAVMERNPV AFMPKIGNIP RHAPQNPENC KCTDCKNYES SEDRKEIRRI  240
TLQHGVYVQH VQNLASKGMI GPSAVLPRAA EKFSGLSVAS LGRDQPIHDN DSSQVLSPLV  300
TYVPTEDTIS PVKLGPHGVT YRTLLADIIQ IEDVNVLCKV LVLVSRQAAG ALLDSGVVED  360
NNIRKLDRGE SRIPSTNHGR KAVQKQHDEQ VCSLENSLIA VPLSEGRAGI PRSDPSDRWK  420
DNRRPVSPGT QALMCNEQDM FFQTSSVAGA ILSTTKENLS ESYKEQEKCV LTNLRDFLRE  480
LAKSGRLQEE KRSLRCH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G213800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.10.0protein tesmin/TSO1-like CXC 7 isoform X1
TrEMBLA0A2K2D1330.0A0A2K2D133_BRADI; Uncharacterized protein
STRINGBRADI3G34670.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-30Tesmin/TSO1-like CXC domain-containing protein