PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G203900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family STAT
Protein Properties Length: 706aa    MW: 77928.4 Da    PI: 5.8834
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G203900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT189.92.8e-592313491118
                STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 
                         l+vvl+na+g+pv+k++++vasL+yad+g+vveks ddaeapLLis++G+e++++++pl +lrGra+fklkisqLsskcdn+Lfri+f+++
  Brast03G203900.1.p 231 LEVVLTNAFGEPVNKEIQIVASLVYADTGAVVEKSrDDAEAPLLISCEGLEYPATSKPLSILRGRALFKLKISQLSSKCDNKLFRIYFSTL 321
                         79*********************************9******************************************************* PP

                STAT  91 klkkypfleavskpirCisrsrntrsss 118
                         +++kypflea s++irCisr r  r+++
  Brast03G203900.1.p 322 HVQKYPFLEASSRSIRCISRGRPIRPLG 349
                         ***********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498999.05E-638182IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555501.7E-6603685IPR000980SH2 domain
PROSITE profilePS500019.9607705IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MAAPTESGGI EDYRSLRDAR VDLDLGAARG SEEGGRARGF AVCFWLYLSG PARPSSVLLH  60
QMTAGADNKL PFLVLSEQNK LLLFPLLRLH REAPGLSSFY PWTDTTNLSS VNECPLEKWI  120
HIGCEVTENV MRLHIDGNLV AEACLCSLSR EPDNQDDAHQ ICLVGSNNMV EGYLCNIQVL  180
SVLGTIHKQY TKNPPSKLSI DYSCYDGIEV GDDGVWCIVG GKPSCRRNVI LEVVLTNAFG  240
EPVNKEIQIV ASLVYADTGA VVEKSRDDAE APLLISCEGL EYPATSKPLS ILRGRALFKL  300
KISQLSSKCD NKLFRIYFST LHVQKYPFLE ASSRSIRCIS RGRPIRPLGP GKRTNSSTMD  360
EIQLVNNAQG FGRVGKVIGC SQSRDQSSVL HLHPSKFLKV EDDGTETHKT VSQTRKMVVE  420
AQSVARTNLA ASDSDSMDAR SSWSESDRDE VETFSDAIIF RYCLEGTSQR STFLRGAAAS  480
INVDDLITLA NQVSLYSGCS HHRNQIIISK QLLEDGADTW SIISKNNERA LWSSAVTEIM  540
GKFMVIAHST NRGLSEQDLE VLRLIAGCGD DLGRDEFDRL WSWLYPVAVS LSKDKINNLW  600
CCTEPVWIEG LITTDEAENA LRSSSELLKK PGTFVLRFPT TRSWPHPDAG SLVVTYVGFD  660
NSIHHRLLSL DASDSRAGGL QDLLLQEPEL LQLGRVDRLP TAMRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G203900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755564.10.0SH2 domain-containing protein A isoform X2
TrEMBLI1I6B10.0I1I6B1_BRADI; Uncharacterized protein
STRINGBRADI3G33820.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-141SH2 domain protein B