PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G199200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 273aa MW: 29430.1 Da PI: 8.8464

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G199200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.4e-15	98	142	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ kqlG+g+W+ I+r + +Rt+ q+ s+ qk+ Brast03G199200.1.p 98 PWTEEEHRKFLDGLKQLGKGDWRGISRSFVPTRTATQVASHAQKH 142 7**************************99**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.121	91	147	IPR017930	Myb domain
SuperFamily	SSF46689	1.22E-17	93	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-16	94	146	IPR006447	Myb domain, plants
SMART	SM00717	2.1E-10	95	145	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-12	96	142	IPR009057	Homeodomain-like
Pfam	PF00249	9.5E-12	98	142	IPR001005	SANT/Myb domain
CDD	cd00167	2.03E-11	98	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MELQGEAEAG TKKAAVVFRL FGVEVHGEAD EDDDGMSVEL RKSSSMPNLN LASSAADPPP 60 PAGDEDKGYA SDDDGVPAST PQLKRRRRKA NERKKGIPWT EEEHRKFLDG LKQLGKGDWR 120 GISRSFVPTR TATQVASHAQ KHFLRQTNPG KKKRRASLFD VVAANGHEDE LPSPQSYTAA 180 TKPAPAEEIL HTDRGDVPMP SYPGGVGRGN NMQVDQPTDH MNKKKSKESM SLAAMAASRL 240 ELELALASSS ASILELSIAP PRRAMADGIK AL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	88	KRRRRK
2	83	94	KRRRRKANERKK
3	84	94	RRRRKANERKK
4	150	154	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G199200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572080.1	0.0	transcription factor MYBS2
Swissprot	B8BI93	7e-77	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	7e-77	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	I1I664	0.0	I1I664_BRADI; Uncharacterized protein
STRING	BRADI3G33440.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	5e-32	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Brast03G199200.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]