PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G195900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 466aa    MW: 49596.9 Da    PI: 6.8638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G195900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.66.9e-16274319555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hne Er+RRdriN+++++L++l+P++      K +Ka++L +++e++k+Lq
  Brast03G195900.1.p 274 HNESERKRRDRINQKMQTLQKLVPNS-----SKTDKASMLDEVIEHLKQLQ 319
                         *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.422269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-19272338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.14E-17274323No hitNo description
PfamPF000101.9E-13274319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17274327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-18275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MNNQCVPSWD LDDPAGLNNP RSASGPAQHP RAGSLTAASG VPMPEPDQYD EVAELTWEKG  60
NIFWQGLLSR PPPPKYPPPS AAAAAAPTMH AGAGEGGRAD RLEQTLEAVV GEAAARSSSR  120
SRRLAPPWPA VAAAEVAAGV VPCAAGDADE EEEDARRNSK RARRQACASQ GSAAAPGARH  180
DSAALLTLEP CGGFTATTTT NNSTSLDLDH GSPEENTENT SFGGGASDSR CFSRRSSQRD  240
GLCDEAETVV IKEEPPMRMR SSVSTKRSRA AAIHNESERK RRDRINQKMQ TLQKLVPNSS  300
KTDKASMLDE VIEHLKQLQA QVQMMSRMGS MMMPMGMAMA PPLQMSVMAN MAQMAQMAQM  360
GLGMMNMAAQ PAAYPGLASP MNMMQPPNPF VPIQPWDAAG ERQKQPAGIA AAAAAMPAYS  420
AFLACQAAAQ QQHQAQPNGM EAYNRMVAMY QKLSQQQNQP GNSKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G195900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234992.10.0transcription factor UNE10
TrEMBLA0A0Q3HWD80.0A0A0Q3HWD8_BRADI; Uncharacterized protein
STRINGBRADI3G33170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-30bHLH family protein