PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G193000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 647aa MW: 67466.5 Da PI: 5.9891

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G193000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	284.3	3.5e-87	272	645	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel..aspdg.d..pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ve+L e+A+ ++gd + a+++Larl+ + a+p++ + p+ R a+yf+eAL+ l+ e y + +p ++++++++ +l a+k+fse+ Brast03G193000.1.p 272 VEQLAEAAKLAEAGDSHGAREILARLNYRlpAAPAAgNtpPLLRSAFYFKEALRVALSAPAGEAYYSPSPPASTPYDVVLKLGAYKAFSEA 362 789**********************999966655235689*************8888888888888889************ PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 sP+l f+hlt+ qa+l+++ +vH++Dfdi++G QW++L+q+La sR+ + ++ lR+T+++sp++++ el+ ++e+L++fA+ lgv Brast03G193000.1.p 363 SPVLPFAHLTCVQAVLDELGDRGCVHVLDFDIGMGEQWASLMQELAsSRRrtSAAAALRVTALVSPATHHPLELQLIHENLSSFAADLGVL 453 ******************************************7555558888******************************* PP GRAS 176 fefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 f+f ++ +++l+ +l ++ +EalaV+l + + ++++L+lvk+l +kvvv v++ d+ + +F+ ++++a++ + Brast03G193000.1.p 454 FQFAAFNVETLDPADLVSIVAGAgDEALAVHLPVGAAHAA--------STPAILRLVKRLGAKVVVAVDRGGDRAELPFAGHLFQAFQSAV 536 *9777777777777766668******999997........4678*********************************** PP GRAS 266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee. 354 l++s++a l+ ++ +++ +Er+l++++++++v +++++r ++ Wr+ + +aGF p++ s++a++qa++ll+kv+++g+rve + Brast03G193000.1.p 537 FLLESMDAVLGGADpDTAGRIERFLVQPAVEQCVVARHRDR--ASPGMMPWRAVFAAAGFAPAQASTFAESQAESLLHKVPVRGFRVERRa 625 ******999989999**************9995..45679************************************774 PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 gsl+l+W++ +LvsvSaWr Brast03G193000.1.p 626 PGSLCLYWQRAELVSVSAWR 645 79999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.397	245	624	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-84	272	645	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MRGMPFAGES HAGIQLLLQQ QQQGVLAGGG KVSGGFWEPT SVLDLRHSPS PSPPVSSAST 60 LSSSEVAALA GGDAKNVSPP PQAWPPGGAG GEDAAGVKEE WAHQLAPLDD MGLAPGDEWD 120 DAAAPPSGPD SSFLRWIIAG GEDGVLMDPP VLELDHATSM MSSPAAAAFG PNLPSSFAPA 180 MEDTKPQQAF GHGPSFLLHH PQPHAAFFGS HPPSFDSPAA TKRHHPMAAA PPPKLPPYPS 240 HHLAPASGGG FVLKQPKAAA ASQDEAAAMA AVEQLAEAAK LAEAGDSHGA REILARLNYR 300 LPAAPAAGNT PPLLRSAFYF KEALRVALSA PAGEAYYSPS PPASTPYDVV LKLGAYKAFS 360 EASPVLPFAH LTCVQAVLDE LGDRGCVHVL DFDIGMGEQW ASLMQELASS RRRTSAAAAL 420 RVTALVSPAT HHPLELQLIH ENLSSFAADL GVLFQFAAFN VETLDPADLV SIVAGAGDEA 480 LAVHLPVGAA HAASTPAILR LVKRLGAKVV VAVDRGGDRA ELPFAGHLFQ AFQSAVFLLE 540 SMDAVLGGAD PDTAGRIERF LVQPAVEQCV VARHRDRASP GMMPWRAVFA AAGFAPAQAS 600 TFAESQAESL LHKVPVRGFR VERRAPGSLC LYWQRAELVS VSAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MRGMPFAGES HAGIQLLLQQ QQQGVLAGGG KVSGGFWEPT SVLDLRHSPS PSPPVSSAST  60
LSSSEVAALA GGDAKNVSPP PQAWPPGGAG GEDAAGVKEE WAHQLAPLDD MGLAPGDEWD  120
DAAAPPSGPD SSFLRWIIAG GEDGVLMDPP VLELDHATSM MSSPAAAAFG PNLPSSFAPA  180
MEDTKPQQAF GHGPSFLLHH PQPHAAFFGS HPPSFDSPAA TKRHHPMAAA PPPKLPPYPS  240
HHLAPASGGG FVLKQPKAAA ASQDEAAAMA AVEQLAEAAK LAEAGDSHGA REILARLNYR  300
LPAAPAAGNT PPLLRSAFYF KEALRVALSA PAGEAYYSPS PPASTPYDVV LKLGAYKAFS  360
EASPVLPFAH LTCVQAVLDE LGDRGCVHVL DFDIGMGEQW ASLMQELASS RRRTSAAAAL  420
RVTALVSPAT HHPLELQLIH ENLSSFAADL GVLFQFAAFN VETLDPADLV SIVAGAGDEA  480
LAVHLPVGAA HAASTPAILR LVKRLGAKVV VAVDRGGDRA ELPFAGHLFQ AFQSAVFLLE  540
SMDAVLGGAD PDTAGRIERF LVQPAVEQCV VARHRDRASP GMMPWRAVFA AAGFAPAQAS  600
TFAESQAESL LHKVPVRGFR VERRAPGSLC LYWQRAELVS VSAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-25	303	645	32	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G193000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010234984.1	0.0	scarecrow-like protein 6
TrEMBL	A0A0Q3LZR9	0.0	A0A0Q3LZR9_BRADI; Uncharacterized protein
STRING	BRADI3G32890.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6723	29	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	4e-65	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast03G193000.1.p