PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G184500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 25597.2 Da PI: 9.7656 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.2e-08 | 3 | 41 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+++ ++++G g +++ R++ +c+srw++yl Brast03G184500.1.p 3 KGKWSKEEDNLIKNHIEMYGIG-------RLQ--RCGRSCRSRWLNYL 41 79******************99.......777..************97 PP | |||||||
2 | Myb_DNA-binding | 27.7 | 6.3e-09 | 48 | 89 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g++T E+ ++ + + G+ W+ Ia+ ++ gRt+ +k++w+ Brast03G184500.1.p 48 GNFTLAEETIIWEMYSKRGSC-WSVIAAQLP-GRTDLAVKNYWN 89 89*****************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.461 | 1 | 45 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-5 | 2 | 43 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.21E-21 | 2 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-6 | 3 | 41 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-12 | 4 | 48 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.23E-6 | 5 | 41 | No hit | No description |
PROSITE profile | PS51294 | 13.078 | 46 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-6 | 46 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-7 | 48 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-18 | 49 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MKKGKWSKEE DNLIKNHIEM YGIGRLQRCG RSCRSRWLNY LRPGLKHGNF TLAEETIIWE 60 MYSKRGSCWS VIAAQLPGRT DLAVKNYWNI TLAKRVPGAR AEARRRRSRP SSSTTSDARK 120 PDEIALVAHD EESATTGSPC HATVGRARPL LAVNAAKEEV GGAARAERKP AVARAPLPEN 180 APPRRGDQAG AMDMVCAPLS PFPLAFMEPD LPWLAGFDEI DSFLPWFDGW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-21 | 1 | 96 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G184500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756015.1 | 1e-115 | transcription factor MYB87 | ||||
TrEMBL | A0A2K2D0I4 | 1e-114 | A0A2K2D0I4_BRADI; Uncharacterized protein | ||||
STRING | MLOC_72262.2 | 1e-106 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 8e-34 | myb domain protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G184500.1.p |