PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G184100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 238aa MW: 25897 Da PI: 10.654 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 98.6 | 3.9e-31 | 19 | 122 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ + +++++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD v+F + Brast03G184100.1.p 19 FEKVVTPSDVGKLNRLVIPKQHAERCfpldldK-GNAGGIILSFEDRGGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLVAGDAVLFARG 108 99***************************9954.45799**************************************************86 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++++++ ++r+ Brast03G184100.1.p 109 RGHGRRFFIDFRRR 122 66899899999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-40 | 11 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.62E-31 | 15 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.59E-27 | 17 | 112 | No hit | No description |
PROSITE profile | PS50863 | 14.776 | 19 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-22 | 19 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-28 | 19 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MEFLPAAAPA ETTEKEHMFE KVVTPSDVGK LNRLVIPKQH AERCFPLDLD KGNAGGIILS 60 FEDRGGKAWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLVAG DAVLFARGRG HGRRFFIDFR 120 RRLRPVPASP PPLPSVPLCR AWPWEGVSFL RQQVPAAAVV LKSVVPAAAA LLEPASRPKR 180 VVRLFGVNLD CPACPPAAAT QTAASTLLLQ QKQLPSPSSS SSSSTAGKEA CSLDLGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-50 | 14 | 122 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-50 | 14 | 122 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G184100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756192.1 | 1e-94 | putative B3 domain-containing protein Os10g0537100 | ||||
Swissprot | Q8LNN8 | 2e-70 | Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100 | ||||
TrEMBL | I1I5Q7 | 2e-93 | I1I5Q7_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G32140.1 | 4e-94 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 2e-46 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G184100.1.p |
Publications ? help Back to Top | |||
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