PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G152000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 686aa    MW: 74596.8 Da    PI: 7.1775
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G152000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24120221199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF  
  Brast03G152000.1.p 120 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL- 207
                         89****************************996555555..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          +++ +el+v+++r+
  Brast03G152000.1.p 208 -RTEHGELCVGIRRA 221
                         .55999*******97 PP
2Auxin_resp119.62.4e-39276359183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+Prast+eFvvk++++++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Brast03G152000.1.p 276 AASLAANGQPFEVVYYPRASTPEFVVKAASMQAAMRIHWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 359
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-36112223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-29113224IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-21119220No hitNo description
PfamPF023624.9E-22120221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929120222IPR003340B3 DNA binding domain
SMARTSM010198.5E-22120222IPR003340B3 DNA binding domain
PfamPF065077.9E-34276359IPR010525Auxin response factor
PROSITE profilePS5174519.571590670IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MKEVGEERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHANGGGGAA AELAATVGPR  60
LLPALVLCSV AGVRFLADPE TDEVFAKIRL VPVGPGEVEF REPEGLGPLE AEAQEKLASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YRADPPVQTV LAKDVHGEVW KFRHIYRGTP  180
RRHLLTTGWS TFVNQKKLVA GDSIVFLRTE HGELCVGIRR AKRVTCGGME CVSGWNAPGY  240
GGFSAFLKDE ENKMMNGSAG YLKGRGKVKI ADVVEAASLA ANGQPFEVVY YPRASTPEFV  300
VKAASMQAAM RIHWCPGMRF KMAFETEDSS RISWFMGTIS SVQVADPIRW PNSPWRLLQV  360
SWDEPDLLQN VKCVSPWLVE LVSSIPPIHL GPFSPPRKKL RVPQHPDFPF DGHLFNPIFH  420
GNPLGPSNSS LRCYPDNSPA GIQGARHSQF GLPLTDHQLN KLHLGLFQGG GFNRLDALTP  480
SSRIPKGYGI SSAPAHDSVS CLLTIGTPQS TEKSDDRKTP HIMLFGKAIL TEQQMTSSGS  540
RDTLSSGATA NSSPYGNAPK AGNTSDGSGS SICIGFSSQG HESSDFGLEA GHCKVFMESE  600
DVGRTIDLSD FVSYEELYGR LADMFGIEKE EITSHLRYRD TAGAVMHTGE LPFSDFMKVA  660
RRLTIISGDS GRLPKPLIEC MAQRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-791038451392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G152000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635000.0AK363500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2016A11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234830.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLI1I4R90.0I1I4R9_BRADI; Auxin response factor
STRINGBRADI3G28950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]