PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G150700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 240aa MW: 24747.3 Da PI: 8.5848 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1e-05 | 62 | 81 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F+++ L H+r Brast03G150700.1.p 62 PCTECGKRFPSWKALFGHMR 81 6******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.91 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.05E-8 | 61 | 83 | No hit | No description |
SMART | SM00355 | 0.0037 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 62 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.0E-9 | 63 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.05E-8 | 148 | 175 | No hit | No description |
Pfam | PF13912 | 1.4E-10 | 153 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.016 | 153 | 175 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.84 | 153 | 175 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEPAQPPPPP PPPPPPGRHE MSLTLTLALP PPALTIPSKP QHLRRVARCS PATGADGTPP 60 SPCTECGKRF PSWKALFGHM RCHPDRQWRG ITPPPYLVRA APGQQCFSAQ EREVAASLLM 120 LSSVSGKGKR KTSASSASPG PSAAAAAESC DEHRCGVCDR GFASGQALGG HKRCHWERAA 180 CAAVIAAGGS GGPASMSEQA AAAVLDLNLP PPPLRGSDQP GSSLNEMLDL KLGLTTGDI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G150700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024317180.1 | 1e-92 | zinc finger protein ZAT3-like | ||||
TrEMBL | A0A2K2CZU6 | 2e-93 | A0A2K2CZU6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G28850.1 | 6e-92 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11612 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 2e-18 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G150700.1.p |