PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G136300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 336aa    MW: 37493.4 Da    PI: 6.6527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G136300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09224271348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                          WTteE  +lv++v ++G g+W+   ++      Rt+ ++k++w+++l
  Brast03G136300.1.p 224 HWTTEEVIKLVEGVSKYGVGRWTELKKEKFssSVRTAVHLKDKWRNLL 271
                         6***********************9998888977************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.121217275IPR017930Myb domain
SuperFamilySSF466893.95E-14219280IPR009057Homeodomain-like
SMARTSM007171.3E-7221273IPR001005SANT/Myb domain
PfamPF002493.0E-7224271IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-12224272IPR009057Homeodomain-like
CDDcd116602.24E-20225272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
METAASSGTG NFPEDNGEIW TPMYSDTLDM GSSSIHPPTQ MEVAFYSAYE DDATTEIQRL  60
LEGPQDERSL DEWLEGWSDQ PQDMQQQTLQ CICDCLENSE WATTEAPANI TCVLATYSGS  120
LSPSTYMREE ILAPDIECEI YSPTKDNGMT TRACRDSKID LLDCIPKRDV RRARRGLRKR  180
RTISWLSMKR PLLLFSHFGN PPFPCNMPSA SKGKKHGARK NNDHWTTEEV IKLVEGVSKY  240
GVGRWTELKK EKFSSSVRTA VHLKDKWRNL LKACEVRFTS TNKVLLPPSG DKTRLTLQPR  300
GPQLLPRVTA TPGEETPPRA PTLTGVTTGS CAALC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G136300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756120.11e-178uncharacterized protein LOC104583657
RefseqXP_014756122.11e-178uncharacterized protein LOC104583657
TrEMBLA0A0Q3LX601e-171A0A0Q3LX60_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.27e-17TRF-like 6