PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G135000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 349aa    MW: 37674.4 Da    PI: 9.0116
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G135000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.51.7e-2693179371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i k +k+ei+wkg
  Brast03G135000.1.p  93 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnsnigsldpdnpntqqyDEKNIRRRVYDALNVLMAMDIIYK-DKKEIQWKG 179
                         689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.3E-1194348IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.0E-4488185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.9E-3691179IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-2494179IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.39E-2094180IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.72E-40184287IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.66E-41186295No hitNo description
SMARTSM011384.7E-75186346IPR014889Transcription factor DP, C-terminal
PfamPF087811.9E-41187321IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVPGARSTGG VANSASNSAA NAGSPSCRSR PGKGAAAAVV TTSASTSTPA RGSTVARRLN  60
DLEIQGDGAP SPQTAASKKK KKGAHVVGPD KGNRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEFSDPN SNIGSLDPDN PNTQQYDEKN IRRRVYDALN VLMAMDIIYK DKKEIQWKGL  180
PRTSMSDIDK LKIKLIGQKG RIDKKSAYLQ ELQDQYVGLQ NLVERNEQLY SSGDAPSGGV  240
ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD SFVLKAMGLS GKEETDGTLA  300
LVANGIECSS TPNVYPHHSP QPARWNGLRL QTSPPIPGIL KGRVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3590184693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G135000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727520.0AK372752.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3011E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573972.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-125DPB_ARATH; Transcription factor-like protein DPB
TrEMBLI1I4A40.0I1I4A4_BRADI; Uncharacterized protein
STRINGBRADI3G27520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-125Transcription factor DP