PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G122600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 404aa    MW: 45739.3 Da    PI: 9.3404
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G122600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-07171232144
                         TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT.......TTS-HHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg.......kgRtlkqcksrw 44 
                         r++WT+eE e+l++      ++            Wk++ ++++        +R+ kqcks+w
  Brast03G122600.1.p 171 RKNWTEEENERLAKSWVHNTTDpvdgnakksdfYWKSVTEEFNnntpadaRKRSSKQCKSHW 232
                         789*********99777777777***************************99********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-5165237IPR009057Homeodomain-like
PROSITE profilePS500907.155166236IPR017877Myb-like domain
PfamPF143031.3E-13253385IPR029466No apical meristem-associated, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDPSNRNFTN ILSQDSTNQY PENANTRPSQ ISPNYSPPHL ATNYPQHPYP QNFPPSQYMQ  60
NSPPSHLLQN INPFGVPRNY QHQHYGHPTS SYESMLQQQA YTNSPSGVFG AAGIRASSSH  120
PPATFIHTDP AASSHGVEAT TPHYSRSQQE EPAQNIESSG SSPEEDERRG RKNWTEEENE  180
RLAKSWVHNT TDPVDGNAKK SDFYWKSVTE EFNNNTPADA RKRSSKQCKS HWGTINKATV  240
LFNGLYKSEN EQKLFTMEYL WDLLKDKPKW RRVYVENVKS KRAKVSESGA YTSSSNPEAG  300
EDANLSRERC PEGQKAAKAR KGKEKGKPQP SPKKLEHMKL LNDAVATRST TLQATAEAAK  360
EKTRMNKLQT YLNLLEKDTS DFNETRLKRH ERVLDQLQQE LFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G122600.1.p
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP449610