PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G121500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 258aa MW: 28474.8 Da PI: 10.3923 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.2 | 4.9e-17 | 46 | 98 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ + eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa +k Brast03G121500.1.p 46 KRRQSVEQVRTLEKNFEVGNKLEPERKLQLARALGLQPRQVAIWFQNRRACWK 98 346789********************************************999 PP | |||||||
2 | HD-ZIP_I/II | 86.2 | 4.3e-28 | 45 | 102 | 2 | 59 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkql 59 kkrr s eqv++LE++Fe +kLeperK +lar+Lglqprqva+WFqnrRA +k+ + Brast03G121500.1.p 45 KKRRQSVEQVRTLEKNFEVGNKLEPERKLQLARALGLQPRQVAIWFQNRRACWKSSSI 102 9*****************************************************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.3E-15 | 43 | 104 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-17 | 44 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.16E-15 | 45 | 101 | No hit | No description |
PROSITE profile | PS50071 | 15.078 | 45 | 100 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.1E-14 | 46 | 98 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 51 | 99 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.5E-5 | 71 | 80 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 8.5E-5 | 80 | 96 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MTPPPMVVGS KRPPTPSIYP DGDLDDGTAS EDEDKEGGLV LVNPKKRRQS VEQVRTLEKN 60 FEVGNKLEPE RKLQLARALG LQPRQVAIWF QNRRACWKSS SIRTTTHCGA SSTPREPRMT 120 RSSRTTTSSR PRSWRSREEE EGAGSRRRCR SSSTSTSRRR RPPAGCSENS SEINLDISRP 180 PPPATTMHRA SGAGAVQFYA SLGRPGLDIE NLLHSHSSSP PLKMELGTAN FGNLLCGSVD 240 EPPQFWQWAA DGHNQFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 160 | RRRCRSSSTSTSRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G121500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095004 | 1e-113 | FP095004.1 Phyllostachys edulis cDNA clone: bphylf056d17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188842.1 | 5e-52 | homeobox-leucine zipper protein HOX21-like isoform X2 | ||||
Swissprot | Q8S7W9 | 2e-45 | HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | A0A3S7QI39 | 4e-52 | A0A3S7QI39_FESAR; Class I homeodomain-leucine zipper protein 21 | ||||
STRING | Traes_4DL_88ABAD6C0.1 | 2e-51 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 4e-27 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G121500.1.p |