PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G119500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 214aa MW: 24541 Da PI: 9.8773

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G119500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.6	3.1e-16	26	107	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk++GF +++s+++ +r +C +eg+ +++ + +++r r+++++gCka++ +k++ dg v+++ eHnH+l+ Brast03G119500.1.p 26 EFYNAYAKHTGFGLKRSQHNAY-------RRYIQCIREGRYTTSVLN-GEHQRGRESKKVGCKAHMSMKMNGDGACIVKNIYFEHNHQLS 107 6************9987765.......8889******9999.999***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-13	26	107	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MQAPELPTNL IPVIGQHSGT FDKAFEFYNA YAKHTGFGLK RSQHNAYRRY IQCIREGRYT 60 TSVLNGEHQR GRESKKVGCK AHMSMKMNGD GACIVKNIYF EHNHQLSLSP SMLVFLHSHK 120 RVNPTLQDYI RDLQLSNVKH VNIMSLLTRM SGGRGKLGCH NKDVLNMKAK NTRMESQDDV 180 QKLLKFFGDM TAENKNFYYD VHGDEENRLN NIF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G119500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757782.1	4e-77	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2K2DQ08	1e-117	A0A2K2DQ08_BRADI; Uncharacterized protein
STRING	BRADI1G47460.1	1e-126	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-24	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast03G119500.1.p