PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G103400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LBD | ||||||||
Protein Properties | Length: 252aa MW: 26033.6 Da PI: 6.8468 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.4 | 2.7e-39 | 33 | 133 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++C++apyf e+ +++fa+vhk+FGasnv+kll ++p +r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++l Brast03G103400.1.p 33 PCGACKFLRRKCVSGCIFAPYFDTEHgAAHFAAVHKVFGASNVSKLLLQIPAPKRLDAVVTICYEAQARIRDPVYGCVSHIFSLQQQVANL 123 7*********************998879*************************************************************** PP DUF260 91 kaelallkee 100 +ael l+++ Brast03G103400.1.p 124 QAELTCLQTH 133 ****998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.696 | 32 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-39 | 33 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSGSTSVGSA SGSGGGGGGG RGIGGSGTVG GGPCGACKFL RRKCVSGCIF APYFDTEHGA 60 AHFAAVHKVF GASNVSKLLL QIPAPKRLDA VVTICYEAQA RIRDPVYGCV SHIFSLQQQV 120 ANLQAELTCL QTHLATLELP APPPFPQQPQ MPMATAPFSI SDLPLLPSNI PSSMDLSSLF 180 DPSMMQSSQQ WAFQQQPQQL QQQPFGPIMG DGSGGSGGGS IGDGDLQALA RELLERQSAG 240 AMPMQPPHTH C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 30 | 134 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 30 | 134 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G103400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094077 | 1e-118 | FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571705.1 | 1e-111 | LOB domain-containing protein 30 | ||||
Swissprot | O81323 | 2e-71 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | I1I3C6 | 1e-109 | I1I3C6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G22510.1 | 1e-110 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 9e-64 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G103400.1.p |
Publications ? help Back to Top | |||
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