PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G100900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 201aa MW: 22229.4 Da PI: 7.0248

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G100900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPktil++m+vkgLtl h+kSHLQkYRl Brast03G100900.1.p 33 KPRLRWTADLHDRFVDAVAQLGGPDKATPKTILRTMGVKGLTLFHLKSHLQKYRL 87 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-32	30	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.694	30	90	IPR017930	Myb domain
SuperFamily	SSF46689	7.35E-17	33	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-25	33	88	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-8	35	86	IPR001005	SANT/Myb domain
Pfam	PF14379	5.4E-18	128	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MFPGLIHHHA ADDAPRGHGG GGAPSLVLTA DPKPRLRWTA DLHDRFVDAV AQLGGPDKAT 60 PKTILRTMGV KGLTLFHLKS HLQKYRLGKQ SGKEITEQSK DGSYLMEAQS GMNLSPRIPI 120 PDVEESQEVK EALREQMEVQ RRLHEQVKVQ ECVKIRREAH QTYIDTLLEK ACMLVSEQLS 180 GFSISDYDLP DLASAGFQIP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-18	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G100900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003573786.1	1e-135	protein PHR1-LIKE 2
Swissprot	Q94A57	4e-64	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	I1I395	1e-133	I1I395_BRADI; Uncharacterized protein
STRING	BRADI3G22297.1	1e-134	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast03G100900.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]