PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G066800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CO-like | ||||||||
Protein Properties | Length: 260aa MW: 26585.6 Da PI: 6.2729 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.9 | 7.7e-07 | 17 | 60 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ + l+C + lC+ C ++H H++vpl Brast03G066800.1.p 17 GCAVCGVAAAALYCAADAAALCAPCDAAIHAAnplasrHQRVPL 60 5*****999*********************66899999999986 PP | |||||||
2 | CCT | 63 | 9.2e-22 | 172 | 215 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+a+++RY+eKr++R+F K+irY+sRKa+Ae RpRvKGrFvk+a Brast03G066800.1.p 172 RQAKVRRYREKREKRRFHKTIRYASRKAYAEARPRVKGRFVKRA 215 99****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.9E-14 | 13 | 60 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.651 | 13 | 60 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.4E-16 | 172 | 214 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.192 | 172 | 214 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGSEGGSSSS GTSPNAGCAV CGVAAAALYC AADAAALCAP CDAAIHAANP LASRHQRVPL 60 MAAAATSGVY DLYGDLFAAD DEAVSASGVS SWPTPAPGQG SPNSSSSGFS NGGAERSLFE 120 LLSDADLMAA APLWMMMAQP GMEAWASPSE AAAAELQSLG GGGGGAMVGA DRQAKVRRYR 180 EKREKRRFHK TIRYASRKAY AEARPRVKGR FVKRAAAAEE DDSGMSAAEG DKFWLSFSDA 240 DGRDGFRAPP AYGVVPSSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 183 | RRYREKRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G066800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068390 | 1e-38 | BT068390.1 Zea mays full-length cDNA clone ZM_BFb0159K08 mRNA, complete cds. | |||
GenBank | KJ727888 | 1e-38 | KJ727888.1 Zea mays clone pUT5981 orphans transcription factor (Orphan319) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571579.1 | 1e-89 | zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | I1I2B4 | 3e-88 | I1I2B4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G19010.1 | 5e-89 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13066 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 4e-12 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G066800.1.p |