PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast03G064100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 311aa MW: 33861.9 Da PI: 6.657 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.9 | 7.7e-13 | 194 | 284 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f ++++s+v k +l +p +f+ + ++k+++ tl +g+sW + + r+ + l + Wk+F+ +n+L++ D ++F+l++ e+ Brast03G064100.1.p 194 FTMIMSRSHVQKPFQLGIPARFL--YRLPKACK-AATLI-CRGKSWPMSY--RGDLKVKKLDAAWKDFAIDNRLQVDDACIFELVNGaGEE 278 6678999***************9..77777773.55555.59********..88888899***********************99776999 PP ..EEEE CS B3 91 elvvkv 96 elv++v Brast03G064100.1.p 279 ELVFQV 284 999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-16 | 188 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-15 | 190 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.65E-16 | 192 | 288 | No hit | No description |
Pfam | PF02362 | 7.5E-11 | 194 | 284 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0034 | 194 | 290 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.842 | 194 | 290 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MSAASTETLP GGGDAAIDAD EGPLSRELRQ LPDQVLQEKL RRMEGMAGFA PRLPDGGRMY 60 DVKLQAVRRE LGRRRQQQAA AASCPAPPPP SPSPVPPTPL HAPHGEPPTD VGRCEQVVQS 120 RCAESPEIQV PPSLPVHSAQ VLTPACPSKQ LPDVHVIKTK LEPCEDSPAQ APYPARDATE 180 DWETTPLSGN RPFFTMIMSR SHVQKPFQLG IPARFLYRLP KACKAATLIC RGKSWPMSYR 240 GDLKVKKLDA AWKDFAIDNR LQVDDACIFE LVNGAGEEEL VFQVQILRCG LPKEVLSKGA 300 TADDPMIILD * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast03G064100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234507.1 | 1e-161 | B3 domain-containing protein Os06g0112300 isoform X2 | ||||
TrEMBL | A0A0Q3JBP9 | 1e-160 | A0A0Q3JBP9_BRADI; Uncharacterized protein | ||||
STRING | EMT13166 | 1e-100 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-07 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast03G064100.1.p |