PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G058200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 351aa MW: 37869.4 Da PI: 7.4025 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.7 | 2.8e-15 | 244 | 328 | 3 | 83 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 k+lt+sdv + gr+vlpkk ae+ ++ ++ ++ l++ d +W++k+++ ++ks++y+l + eFvka+gL++gD +v++ Brast03G058200.1.p 244 KELTKSDVANVGRIVLPKKDAEASlpQLCQRDPMILQMDDmVLPVTWKFKYRFwpNNKSRMYILD-STAEFVKAHGLQAGDALVIY 328 899******************99999777778888888885556*******99777777777777.9*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.73E-16 | 241 | 329 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.61E-21 | 241 | 339 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-21 | 241 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.586 | 242 | 344 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-7 | 242 | 342 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-12 | 244 | 328 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGGGDGRSGA GSGAGGGHPH QFQYQALLAA VGTHNPNPNT LPFPLPPLNG NGPDAPANNA 60 ARQPPAPRGF ADWSAANSAF TSLAAQSTPA ASTAATTNAF HYSVSPCYAF WTHYMLNKSG 120 YSYYPPQHQE HPHPFCPDSQ QAKNTGSALS FGIDSFTSTS VAPNISLAPN GSAHMPPMEA 180 HISTKEPETS EDVPRVVRRK DGMETSNRGE DNCETVDTLP ELKQGHESCA TKFNSGEYQV 240 ILRKELTKSD VANVGRIVLP KKDAEASLPQ LCQRDPMILQ MDDMVLPVTW KFKYRFWPNN 300 KSRMYILDST AEFVKAHGLQ AGDALVIYKN PVPGKFIIRG EKAIQHPTNP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 1e-31 | 233 | 331 | 4 | 102 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 1e-31 | 233 | 331 | 4 | 102 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G058200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated during the early stage of iron deficiency (at protein level). {ECO:0000269|PubMed:27137867}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373902 | 1e-162 | AK373902.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3046N18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573243.1 | 0.0 | B3 domain-containing protein IDEF1 | ||||
Swissprot | Q6Z1Z3 | 1e-120 | IDEF1_ORYSJ; B3 domain-containing protein IDEF1 | ||||
TrEMBL | I1I079 | 0.0 | I1I079_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G12910.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11346 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 7e-33 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G058200.1.p |