PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G053300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 277aa    MW: 29831.5 Da    PI: 7.0433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G053300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09147187954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Brast03G053300.1.p 147 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 187
                         699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-13143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-11144190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-13144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-7148187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-6161190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDNMSSHHQN SSSSASSWDL DMSLGTHHHP LLFDHPAAAA PAPPPPPQPP LMPFPLHHHL  60
DPSPSSSSPH FYFHHQQQQH EEEPIQMRPP PLPEQQEALA AEEELGAMKE MMYRIAAMQP  120
VDIDPATIKK PRRRNVRISE DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA  180
IRYIKFLKRQ DLQSPPPPPG PGTTAAAYHG AGPSSGGGVG RPPFLSGPMV DWAAGLTARA  240
GEVHGPSSES TSSSSMGGAL GFGFSGGGQS SQHGMH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G053300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2410051e-103AK241005.1 Oryza sativa Japonica Group cDNA, clone: J065053F23, full insert sequence.
GenBankAP0044621e-103AP004462.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0450B04.
GenBankAP0045841e-103AP004584.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0007D08.
GenBankAP0149641e-103AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-103CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236398.17e-78transcription factor HEC3
TrEMBLI1I0C62e-76I1I0C6_BRADI; Uncharacterized protein
STRINGBRADI3G13300.13e-77(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.11e-35bHLH family protein