PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G041800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LSD
Protein Properties Length: 132aa    MW: 14087.1 Da    PI: 9.3066
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G041800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD125.71.9e-082345123
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                        C+gC tlL Y+rGA ++RC+ C 
  Brast03G041800.1.p 23 CSGCLTLLYYTRGAANIRCSRCS 45
                        **********************6 PP

2zf-LSD140.44.8e-136184124
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                        Cg Crt+L+YP+GA  VRCa C++
  Brast03G041800.1.p 61 CGRCRTTLMYPPGAVTVRCATCQH 84
                        ***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.1E-102148IPR005735Zinc finger, LSD1-type
PfamPF069438.8E-82345IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.0E-115885IPR005735Zinc finger, LSD1-type
PfamPF069435.7E-126184IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MPRCTSSING QSDNTAAMSE MICSGCLTLL YYTRGAANIR CSRCSRVNST RSASQIAHLT  60
CGRCRTTLMY PPGAVTVRCA TCQHDNCVRG QGSSAPPDAR PQTVLVENPR TMNDKGKLVS  120
NVAVGVTSWK R*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G041800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2498965e-83AK249896.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf55k22, mRNA sequence.
GenBankAK3536825e-83AK353682.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002A12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573341.12e-88protein LOL4
SwissprotQ84UR02e-54LOL4_ORYSJ; Protein LOL4
TrEMBLI1I0P34e-87I1I0P3_BRADI; Uncharacterized protein
STRINGBRADI3G14290.17e-88(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-28LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]