PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G041800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LSD | ||||||||
Protein Properties | Length: 132aa MW: 14087.1 Da PI: 9.3066 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 25.7 | 1.9e-08 | 23 | 45 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC tlL Y+rGA ++RC+ C Brast03G041800.1.p 23 CSGCLTLLYYTRGAANIRCSRCS 45 **********************6 PP | |||||||
2 | zf-LSD1 | 40.4 | 4.8e-13 | 61 | 84 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP+GA VRCa C++ Brast03G041800.1.p 61 CGRCRTTLMYPPGAVTVRCATCQH 84 ***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.1E-10 | 21 | 48 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.8E-8 | 23 | 45 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.0E-11 | 58 | 85 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.7E-12 | 61 | 84 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MPRCTSSING QSDNTAAMSE MICSGCLTLL YYTRGAANIR CSRCSRVNST RSASQIAHLT 60 CGRCRTTLMY PPGAVTVRCA TCQHDNCVRG QGSSAPPDAR PQTVLVENPR TMNDKGKLVS 120 NVAVGVTSWK R* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G041800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249896 | 5e-83 | AK249896.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf55k22, mRNA sequence. | |||
GenBank | AK353682 | 5e-83 | AK353682.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002A12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573341.1 | 2e-88 | protein LOL4 | ||||
Swissprot | Q84UR0 | 2e-54 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | I1I0P3 | 4e-87 | I1I0P3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G14290.1 | 7e-88 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-28 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G041800.1.p |
Publications ? help Back to Top | |||
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