PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G040000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 966aa    MW: 106706 Da    PI: 9.3858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G040000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07310329626
                         -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                         C++f r G C++G++C++aH+
  Brast03G040000.1.p 310 CNDFVR-GRCSRGANCRYAHD 329
                         ******.*************7 PP
2zf-CCCH20.39.5e-07367387425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                         ++C+ffa+ G C++G +C++ H
  Brast03G040000.1.p 367 KPCKFFAE-GRCRRGQSCPYLH 387
                         79******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.032221245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906224246IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027303330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709304331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5310330IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4310329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.122363390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-7364388IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5364389IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4366387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4367389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MAGVARRGRS KWDTKEISPD IVEISEDESP PMNKDDQSKD GDLLPSQDRT NDNGKQLGES  60
SNLKSDAFMH RGGAGQEQEH THGLNKDIKE RQSKASSERS QPPRMADEVH NNNGWGKLGL  120
EKATGNQGMN RYADDRRRGD GWGTAVGRGY PSRMSSGPDA WRQRSRSPSP RGAWNRSRRI  180
RSRSRSRSRS RERGRGRSRS PYFSDRGSDW RVDRGRASGG PSLLCRDFTA GRCRRGLHCR  240
FPHEDGGRRE FDELYTADPR ERYVHENKDF MDPREPPNDY LRSRPSRGHY EEGTRERSEP  300
RRDYRPADQC NDFVRGRCSR GANCRYAHDD SASHVGWRDD VREIAHGRGG PDSSFGNRTE  360
HRRENKKPCK FFAEGRCRRG QSCPYLHEET PQSQMGLGPP DEPLKYSDAR TTGGNYSNWG  420
EQTNATHASS HILSRDDREN TGSQGTGRVD TGYEYKSRQL KEAGRSQYQI IPQEDFGSQA  480
QNKHEMTASK QPQFLSPIQT SVDSMNHDKV AGTDGQSGSG TTGNLSMQTA MHAANLLQAQ  540
NLGQIAQSQD GIPPAPTLPV TSQLQNANSI LPFNGQLHQS DFSLHPNRQD QFLASQAAAP  600
YMGHNQHGYT LGPHALPDLS VLNGQNFNVA GQAPENRSTP AHASQRQATM DMPNPSQDSG  660
TQSRQDTHNF QPVAPNMQTQ NQTLQGLSGQ DSGIQSIHNT HNFRPVSQYV QSQSQNLQGL  720
SVLPNSSSAD MVGVPVPHNA ATSGEDVRRA VTSLAPFLMQ TGTTGLQSSQ PNLNPSLMVT  780
SSAAAPAVQP NMWPWAQQQA GMVQPTHPIP SEHQAPQTFQ VSTAAGTSNG NPVLLTHSVV  840
PTAHAATSVV NETTMPSENK KGEPRDTDGE APEDGDNKKS KESKALKLFK LALADFVKEA  900
LKPTWKEGQM TREVHKTIVK KVVDKVTSTV ENTPQTKEKI EVYMAYSKEK LSKLVQAYVG  960
KYVKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192RSRSRSRER
2188198RSRERGRGRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G040000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234284.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_010234285.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_010234286.10.0zinc finger CCCH domain-containing protein 55
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLI1I0R90.0I1I0R9_BRADI; Uncharacterized protein
STRINGBRADI3G14480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]