PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G033900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 21967.8 Da PI: 10.6023 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.5e-16 | 47 | 96 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +gr++AeIrd + ng +r++lg+fg+ae Aa a+++a+++ +g Brast03G033900.1.p 47 FIGVRTRP-WGRFAAEIRDSTRNG--ARVWLGTFGSAEAAAMAYDQAALSSRG 96 57***999.**********44465..**********************98665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.7E-26 | 46 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.139 | 46 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.80E-12 | 47 | 104 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-25 | 47 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-19 | 47 | 105 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-7 | 47 | 58 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-11 | 47 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-7 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MYSSSPSSSD SSFPSELSSS SSRSGGEETT MLEEAPSRRI FKPAMAFIGV RTRPWGRFAA 60 EIRDSTRNGA RVWLGTFGSA EAAAMAYDQA ALSSRGAATP LNFPLARVQD SLRVLALGGA 120 AGSPVLALKQ RHSRRTRRKK ADIILSAVSG RKKQQQSCTN NNSSMAAAGK KAGEQKRFIL 180 ELEDLGTDYL EELLRVSELM CTAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-22 | 47 | 105 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-22 | 47 | 105 | 6 | 64 | ATERF1 |
3gcc_A | 7e-22 | 47 | 105 | 6 | 64 | ATERF1 |
5wx9_A | 2e-21 | 47 | 104 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G033900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571392.2 | 7e-84 | ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A2K2CX69 | 6e-81 | A0A2K2CX69_BRADI; Uncharacterized protein | ||||
STRING | EMT24342 | 4e-47 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-28 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G033900.1.p |