PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G031800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 799aa    MW: 85781.7 Da    PI: 5.9318
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G031800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.2e-21120176157
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Brast03G031800.1.p 120 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 176
                         688999************************************************995 PP
2START203.68.1e-643195351206
                         HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela +a++el+++a ++ep+W++++  e+e++  v+       +        + ea+ra +vv+m++a lve+l+d++ q+ + +     +
  Brast03G031800.1.p 319 ELAVAAMDELLQMARVDEPLWSTEAqlEEEEYGRVYGAR----GlgprqygLKPEASRAAAVVIMTHASLVEILMDVN-QFATVFSsivsR 404
                         57899********************66555555555444....2235667899*************************.88888888888* PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+t+ev+s+g      galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ +     v+++++pSg+li++++ng+s
  Brast03G031800.1.p 405 ASTHEVLSTGvagnydGALQVMSMEFQVPSPLVPtRESYFVRYCKHNPDGSWAVVDVSLDSLRPST----AVKCRRRPSGCLIQELPNGYS 491
                         ****************************************************************98....5******************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtwvehv++++r++h ++++lv+sgla+gak+wv tl+rqce+
  Brast03G031800.1.p 492 KVTWVEHVEVDDRSVHGIYKPLVNSGLAFGAKRWVGTLGRQCER 535
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-24102175IPR009057Homeodomain-like
SuperFamilySSF466891.75E-20107177IPR009057Homeodomain-like
PROSITE profilePS5007117.605117177IPR001356Homeobox domain
SMARTSM003892.5E-20118181IPR001356Homeobox domain
PfamPF000461.6E-18120175IPR001356Homeobox domain
CDDcd000864.33E-20120178No hitNo description
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
PROSITE profilePS5084841.413310538IPR002913START domain
SuperFamilySSF559615.08E-35312537No hitNo description
CDDcd088756.99E-112314534No hitNo description
SMARTSM002347.1E-61319535IPR002913START domain
PfamPF018528.9E-54320535IPR002913START domain
Gene3DG3DSA:3.30.530.207.0E-7372529IPR023393START-like domain
SuperFamilySSF559612.82E-25557786No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MTPARRLPPM IGRNGVAYGS PSALSLSQAD LLESHHLQQA LIQQQLYEQI PATMSTPGAV  60
VVDHMHNNNL HGMAPPDELE SKSCSENGGA DADAGGGGGG SGGEEGEDEE QDPNQRPRKK  120
KRYHRHTQHQ IQELEAFFKE CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKNQHEK  180
QENSQLRAEN DKLRAENMRY KEALSSASCP SCGGPAALGE MSFDEHHLRL DNARLRDEID  240
RISAIAAKHV AATGKPMPFP MPMPSSTFHG LSPAAAARSP LDLVGAYGGA AGDVFGGDLM  300
LRGHGHGLLG DADKPLIVEL AVAAMDELLQ MARVDEPLWS TEAQLEEEEY GRVYGARGLG  360
PRQYGLKPEA SRAAAVVIMT HASLVEILMD VNQFATVFSS IVSRASTHEV LSTGVAGNYD  420
GALQVMSMEF QVPSPLVPTR ESYFVRYCKH NPDGSWAVVD VSLDSLRPST AVKCRRRPSG  480
CLIQELPNGY SKVTWVEHVE VDDRSVHGIY KPLVNSGLAF GAKRWVGTLG RQCERLASAM  540
ASSIPNGDLG VITSVEGRKS MLKLAERMVA SFCGGVTASV AHQWTTLSGS GAEDVRVMTR  600
KSVDDPGRPP GIVLNAATSF WLPVSPNTVF DFLRDETSRS EWDILSNGGV VQEMAHIANG  660
RDHGNCVSLL RVNSANSNQS NMLILQESCT DESGSSYVVY APVDIVAMNV VLNGGDPDYV  720
ALLPSGFAIL PDGPPSGNEE GGGGKGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIAC  780
TVERIKAAVC RGGSSNPQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G031800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0779930.0AB077993.1 Oryza sativa mRNA for Roc1, complete cds.
GenBankAK1204960.0AK120496.1 Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573403.10.0homeobox-leucine zipper protein ROC1
RefseqXP_010234329.10.0homeobox-leucine zipper protein ROC1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLI1I1170.0I1I117_BRADI; Uncharacterized protein
STRINGBRADI3G15327.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]