PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G030600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 377aa    MW: 39313.6 Da    PI: 8.2486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G030600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000322693011754
                         HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++   L++l+ +      +K + a++L +++eYIk L
  Brast03G030600.1.p 269 GDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 301
                         55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.369252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.55E-5262305No hitNo description
SuperFamilySSF474591.19E-10262319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-7266310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MADHQEMIRA ADSSAAMYNN AGGGVQASRG GGADSWWSTA ESPAGSLAPA GSSITFQEPP  60
AAAGWNQTSF LDDGSGFHGY MSSRPASDHQ AHHHINPPPS LLMSPSSSNN NSSNMMLQLQ  120
QAAADQHDPN YQFLSNLGFE LLSSPAATPY AAGGGGSRPA SSLLRSLTEP SASAKPSYQP  180
ASVATTPFWN PTTGFDAAAY RASLAAAGPP PAQSRPASLA AKNTVEGVGE SSSCMVTKKT  240
SSGPTAKKAR TGTPPSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV LHETIEYIKF  300
LHEQVGAHSA PYLKNRQQQV PHSKISSADK KNNGGEEAAR DLMGRGLCLV PISSTFAVAS  360
ETPVVDYWNP FGAAFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G030600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695052e-41AK369505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092J07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571405.10.0transcription factor bHLH112
TrEMBLA0A0Q3F6U40.0A0A0Q3F6U4_BRADI; Uncharacterized protein
STRINGBRADI3G15440.11e-177(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-40bHLH family protein