PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G019600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 331aa    MW: 35158.3 Da    PI: 7.3444
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G019600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-32144197255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Brast03G019600.1.p 144 PRMRWTSTLHSRFVHAVELLGGHDRATPKAVLELMDVKDLTLAHVKSHLQMYRT 197
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-29141198IPR009057Homeodomain-like
SuperFamilySSF466891.02E-15142198IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-24144197IPR006447Myb domain, plants
PfamPF002495.7E-7145196IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPATT ATRGHDHHHH QARFFGPPSS SNPAMAPPPP PLQLPFPMPH  60
LPLPMPPGMG HGGGLYYPNG GLLRPIRGVP LYGSGPGPHA PNNPAAMAPP CYCDPYARRS  120
GGGGGGGGRI LGGFPAPKRA ARAPRMRWTS TLHSRFVHAV ELLGGHDRAT PKAVLELMDV  180
KDLTLAHVKS HLQMYRTVKN TERPAASSDQ ADGFENGSAG EICDDNLLDL HGGGRTAEAA  240
AARHARLAAA NDHDGSISAG ALWNSSSREE DWSGFPCDSN NESMQSFKDH MQSKSLEILS  300
DINSCLSETT SSASEPNLDF TLGRPHHRRS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-17145199357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-17145199357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-17145199357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-17145199357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G019600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571453.11e-165probable transcription factor KAN2
TrEMBLI1I1D51e-164I1I1D5_BRADI; Uncharacterized protein
STRINGBRADI3G16340.11e-165(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.19e-38G2-like family protein