PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G019000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 319aa    MW: 33579.4 Da    PI: 8.2251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G019000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07167208240
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                         g WT +E ell +   +++ g   +W++Ia+ +g +Rt++++
  Brast03G019000.1.p 167 GEWTDQEMELLRRQMVKHPAGepqRWEKIAAVFGGRRTPESV 208
                         78********************************99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.017165218IPR001005SANT/Myb domain
PfamPF002498.2E-6167209IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-5167202IPR009057Homeodomain-like
PROSITE profilePS500905.993167208IPR017877Myb-like domain
SuperFamilySSF466892.24E-7167210IPR009057Homeodomain-like
CDDcd001675.82E-6168210No hitNo description
SMARTSM007171.0E-4254306IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-9255304IPR009057Homeodomain-like
PROSITE profilePS500906.609256304IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.2E-5257314IPR009057Homeodomain-like
CDDcd001670.00358264304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEFIDDEWDS QPRARVIHSR AAPSANSSPA TADRASRSLP HTAACAAAAV LLLAAAYSLD  60
AAYQVFSSVL VWVAASLLLA PFAPSSATGG DISVGRGSPL PEQEPAEEPS LDPPPATRRG  120
RRQNTTPAPA KPSDPIDPPV QQRPPRKEAT GGGNSDVGRG ERAEDVGEWT DQEMELLRRQ  180
MVKHPAGEPQ RWEKIAAVFG GRRTPESVIR AAKSGGAAAA APGGSFEQFL RKRKPLDPRA  240
EAAEADEGGS AGGGDGGWSA GDDRALLNAL KEFPKDTAMR WEKVAAAVPG KTKAGCMKRV  300
TELKRDFRSS KTSSDTAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234LRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G019000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573464.11e-168transcription factor MAMYB
TrEMBLI1I1E41e-167I1I1E4_BRADI; Uncharacterized protein
STRINGBRADI3G16420.11e-168(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-44MYB_related family protein