PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G018400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 800aa    MW: 87615.7 Da    PI: 4.4777
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G018400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.96.7e-5291421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrFhPtdeelv +yLk k++g+ + + evi+e+d++k+ePwdLp k  +++e+ ew+fF+++d+ky++g+r+nrat++gyWkatgkd
  Brast03G018400.1.p   9 LPLGFRFHPTDEELVRHYLKGKITGQINAEVEVIPEIDVCKCEPWDLPdKsLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKD 99 
                         699***********************988889***************96446677888********************************* PP

                 NAM  90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + ++sk    k++ +g+kktLvf++grapkge+t W+mheyr 
  Brast03G018400.1.p 100 RIIKSKgekkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                         *****976555556***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-583163IPR003441NAC domain
PROSITE profilePS5100557.0289163IPR003441NAC domain
PfamPF023651.5E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MTVMELKTLP LGFRFHPTDE ELVRHYLKGK ITGQINAEVE VIPEIDVCKC EPWDLPDKSL  60
IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR IIKSKGEKKK QHMIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQVEKNER SSPDEMDRSG  180
YSPTPSRSTP DNMEANEEAI TPLNKESPES GVQGCPIDLP GTVETQGAPI TRWLADRTDN  240
LVTHEANILR MPFHGHVDEI PKTGPLVQPI DPQKKNVDSE EFMTFAAPML PHEGNALFGN  300
SPLQGHPFDF GGNMVSGDLV EKFLNETIAD PDEHSSTASK VQYDSDTGIM LPEFENNCTM  360
QGELLDPYWF ENINFCPDDT TPQLSGYENT PLLPFIGSNP DELSMDSDHE SMQDLFNTME  420
DSNEKMGGWN NGFGFNPIHQ QLQSTMHPNH LVSQQGCAQR RIRLQDSLSA VNIEGEESMV  480
KDEDEVSHTV TSNHMSESVE STADGDDGDS TGVIIMSRRP APSTNEPSDG DDGDSTGVTI  540
MSRRPATPTN EPSDGEDGDS TGVTITSRRP ASSTNEPSDG DDGDSTGVTI ISRRPALSTD  600
EPSDGDDAES TGVLIMSRGP ALSSDVPSDR ADAESAGVTV LSRCPALSSS SDSSITQQGT  660
AGRRLRLQLN LNAGACSSID GSSSCMTDEK GNKYKGMRAE NEGMDTSLCD SVDFVGNSHA  720
DEQDNIPEHD AARPVPEANS VTRLRKTAEK SDKENKQELG VHPHVRAPRK KGGFPAYIIW  780
PVLSVALLIL VSVGIYGLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-46816419169NAC domain-containing protein 19
3swm_B1e-46816419169NAC domain-containing protein 19
3swm_C1e-46816419169NAC domain-containing protein 19
3swm_D1e-46816419169NAC domain-containing protein 19
3swp_A1e-46816419169NAC domain-containing protein 19
3swp_B1e-46816419169NAC domain-containing protein 19
3swp_C1e-46816419169NAC domain-containing protein 19
3swp_D1e-46816419169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G018400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2497490.0AK249749.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54a18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234378.10.0NAC domain-containing protein 14
TrEMBLI1I1F00.0I1I1F0_BRADI; Uncharacterized protein
STRINGBRADI3G16480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-68NAC 014