PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G011800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 315aa    MW: 34817.4 Da    PI: 6.5664
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G011800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+lv++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  Brast03G011800.1.p 14 RGLWSPEEDEKLVRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                        788*******************************************97 PP
2Myb_DNA-binding591e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rgr+T+eE++l++ +++  G++ W+ Ia++m+ gRt++++k++w+++
  Brast03G011800.1.p  67 RGRFTPEEEKLIISLHAIVGNR-WAHIASHMP-GRTDNEIKNYWNSW 111
                         89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1961IPR017930Myb domain
SuperFamilySSF466891.72E-3011108IPR009057Homeodomain-like
SMARTSM007173.3E-121363IPR001005SANT/Myb domain
PfamPF002493.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-251568IPR009057Homeodomain-like
CDDcd001679.02E-121761No hitNo description
PROSITE profilePS5129426.47362116IPR017930Myb domain
SMARTSM007176.4E-1866114IPR001005SANT/Myb domain
PfamPF002493.9E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2669116IPR009057Homeodomain-like
CDDcd001675.97E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLVRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHAIVGNRWA HIASHMPGRT DNEIKNYWNS WIKKKIRKHS  120
TPAASSSPTA TSPPPPPNTS SLQPAPPPGS RRPLQHPTFS CASPGPAELQ LDAFMGPQAQ  180
AQQGVVVCGR DQLENLSPPG GSAMAAAPPL FIFTAAMAAA GGCYDGGQLP PLVDGMGAMA  240
MVDDHCRYEI VEEQKQRLRR PDTDPELELE LELEEERWVD EEQLLMWHDV HDGLTTAPPS  300
SHGDHSSLLF MGPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G011800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284951e-133KJ728495.1 Zea mays clone pUT6800 MYB transcription factor (MYB92) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755642.11e-148myb-related protein Zm38
TrEMBLC3SAD71e-147C3SAD7_BRADI; Myb-like DNA-binding domain containing protein
STRINGBRADI3G17165.11e-148(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-83myb domain protein 103