PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G389200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 367aa    MW: 39364.8 Da    PI: 6.5044
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G389200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.5e-31168226259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  Brast02G389200.1.p 168 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 226
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247162228IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-31165228IPR003657WRKY domain
SuperFamilySSF1182901.57E-26166228IPR003657WRKY domain
SMARTSM007744.3E-38167227IPR003657WRKY domain
PfamPF031068.0E-26169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDTMPTEIED NDAQGDLADV VARASNATAA PASSTHHRHQ PDLLPPPSAA AHHRSPDQYL  60
AAAEQQIMVS TGVDPYLSAV AVYGLQPHQH RQLMAAQISH QQSSQYVCCG AGDLVMGADD  120
GAMRISPPAA PQHNQMIKRK SDVRKVVCIP APPATSSRGG AGGEVIPSDL WAWRKYGQKP  180
IKGSPYPRGY YRCSSSKGCM ARKQVERSRS DPNMLVITYT AEHNHPWPMH RNVLAGYARA  240
PPHAIAAATR NSSKQHQQQD KIVNDNSAAI SPSSSSNSYN FHLELQANNN TTMAADGDGI  300
GVGEEAYELM APCVSGGVQL LQADEMFAEL EELEPADSSM MMISSAANVY SGGVSSGSSN  360
YEWHKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-24140228279Disease resistance protein RRS1
5w3x_D9e-24140228279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G389200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752000.10.0probable WRKY transcription factor 14
SwissprotO647472e-54WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A2K2DHK80.0A0A2K2DHK8_BRADI; Uncharacterized protein
STRINGMLOC_58349.15e-90(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-54WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]