PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G388400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 525aa    MW: 57159.5 Da    PI: 4.536
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G388400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.1e-35491392101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d+ ++ ++sw   +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Brast02G388400.1.p  49 FLMKTYEMVDDPGTDAVVSWGPGNNSFIVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 130
                         9*********************99*****************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Brast02G388400.1.p 131 LLKTINRRK 139
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3844133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6145138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3545138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3049138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEGGVVAAAA AAAAAAAATV TTAVAPPPPP PAAAASNGGG GAAAAPPPFL MKTYEMVDDP  60
GTDAVVSWGP GNNSFIVWNT PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA  120
NEGFLRGQKH LLKTINRRKP LHGNNQMQVQ QQQQQQQPQL QNAPIPACVE VGKFGMEEEI  180
EMLKRDKNVL MQELVRLRQQ QQTTDHQLQT LGKRLQGMEQ RQQQMMSFLA KAMQSPGFLA  240
QFVQQNENXR RRIVAANKKR RLPKQGDGLD SESVSLDGQI IKYQPMINEA ATAMLRKILQ  300
QDSSRYESMG NSDNFLLENC MPTAQAFDSS SSTXNSAVTL AEVPGNSXIP YMAASSGLSA  360
ICSSSTPPEI QHPVMDNNLS KELPNMSAVP SVPTAMAPGP NDIGIPGFPD LHDIITEDVV  420
GIPGGSFEMP GPECIFPLPE DGDDSIPIDT DEILSSDDTQ KLPAIIDSFW EQFLVTSPLS  480
VDNDEVDSGL LDTREAQLDN GWTRTDNLAN LTEQMGLLSS NHRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-274013817129Heat shock factor protein 1
5d5v_B3e-274013817129Heat shock factor protein 1
5d5v_D3e-274013817129Heat shock factor protein 1
5hdg_A3e-27471388110Heat shock factor protein 1
5hdn_A3e-27471388110Heat shock factor protein 1
5hdn_B3e-27471388110Heat shock factor protein 1
5hdn_C3e-27471388110Heat shock factor protein 1
5hdn_D3e-27471388110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G388400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3549170.0AK354917.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1013F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559114.10.0heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLI1GKP10.0I1GKP1_BRADI; Uncharacterized protein
STRINGBRADI1G01130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-118heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]