PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G362200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 662aa    MW: 73650.3 Da    PI: 6.5151
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G362200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.29.3e-1122896592374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL++cA+a + +d ++  +lL+++++++s  gd+ qRla+yf+++L+arla+++s++y++l +++++   +++ l+a++l++ v+P+ k
  Brast02G362200.1.p 289 TTLLIHCAQATAIDDYRNSAELLKQIRQHSSALGDAGQRLAHYFANGLEARLAGTGSTMYRSLVAQRNA---TADILKAFELYVTVCPFNK 376
                         689***********************************************************9999888...8****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         +s +  N+aIl+a +  +r+Hi+D++i  G+QWp ++q +a+R++gpp++RiTg++ p++g   +e++e+tg+rL+++A++++vpfe+++ 
  Brast02G362200.1.p 377 LSKFFSNEAILNASKDVTRLHIVDYGIRWGFQWPIFMQRIAKRTGGPPRVRITGIDLPQPGfrPAERVEATGQRLREYARTFKVPFEYHA- 466
                         ************************************************************9*****************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +a +++++++e+L+++++E l+Vn+ + + +++de+v+ +s+r +vL+++++++P+++++   +  +n++ F++rf eal yys+lfd+le
  Brast02G362200.1.p 467 IAAKWDTVRVEDLKIDKDELLIVNCTFLMRHMMDETVTDDSPRMRVLNTIRKMNPHMFIHGVLNGTYNAPFFVTRFKEALFYYSSLFDMLE 557
                         799**************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         ++ +r +e+r  +Er ++gre+ nv+aceg+er+er et+++W+ r  +aGF+++pl+++++k+a++ + k + + + v+e+++++++gWk
  Brast02G362200.1.p 558 TTGSRMDEHRLLIERDFFGREALNVIACEGTERVERPETYKQWQVRNIRAGFRQLPLNQDTVKKARYKVTKSYHKDFLVDEDNKWMLQGWK 648
                         *************************************************************************888*************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r +++ S W+
  Brast02G362200.1.p 649 GRVILAQSTWK 659
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.503262639IPR005202Transcription factor GRAS
PfamPF035143.2E-109289659IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MGSCEDVDYG DIFSLPNPAA APPYMFDFSL QQQQQQQLRF PGPYGFHAGS IGPPPPSGPP  60
ARGQTPSPSS SITTAELEAP EDASGDAVLA YINQFLLEDE EDDPCPGGAS SSAAAGPSLL  120
AVEKPFVDII AGAAPTGARR ENHNNPWMDP CCGFAGNGAG FAGEFVGRQT SSSSSSCQIV  180
PCEEEPVKVE GDCAVHKGRK NRHGDRGVEL LEEEEERRSK QSAVCEEETV REMFDKVLLC  240
NGVNCILQSP LPAEAEVSAV YVKGSGNRRG RKKGKPGAAA AEEESVDLTT LLIHCAQATA  300
IDDYRNSAEL LKQIRQHSSA LGDAGQRLAH YFANGLEARL AGTGSTMYRS LVAQRNATAD  360
ILKAFELYVT VCPFNKLSKF FSNEAILNAS KDVTRLHIVD YGIRWGFQWP IFMQRIAKRT  420
GGPPRVRITG IDLPQPGFRP AERVEATGQR LREYARTFKV PFEYHAIAAK WDTVRVEDLK  480
IDKDELLIVN CTFLMRHMMD ETVTDDSPRM RVLNTIRKMN PHMFIHGVLN GTYNAPFFVT  540
RFKEALFYYS SLFDMLETTG SRMDEHRLLI ERDFFGREAL NVIACEGTER VERPETYKQW  600
QVRNIRAGFR QLPLNQDTVK KARYKVTKSY HKDFLVDEDN KWMLQGWKGR VILAQSTWKP  660
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-502926598375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G362200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227583.10.0scarecrow-like protein 9
SwissprotQ9XE581e-168SCL14_ARATH; Scarecrow-like protein 14
TrEMBLI1GLI50.0I1GLI5_BRADI; Uncharacterized protein
STRINGBRADI1G03620.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-166SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]