PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G360500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 136aa MW: 14370.6 Da PI: 10.7643 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F + L H+r+H Brast02G360500.1.p 96 HECHVCGAGFETGQALGGHMRRH 118 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 39 | 66 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.73E-6 | 39 | 69 | No hit | No description |
Pfam | PF13912 | 3.1E-10 | 43 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.93 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.96 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.33E-6 | 95 | 122 | No hit | No description |
Pfam | PF13912 | 5.0E-12 | 96 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.221 | 96 | 123 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.045 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MKQPGDQSEV PLSLSLSPCA MAAERKIKKL RHGAAGGAGE SPFVCKTCSR AFASFQALGG 60 HRTSHLRGRH GLALSLAGLP PPARRKTDQK KPPPQHECHV CGAGFETGQA LGGHMRRHRE 120 EAAAQPPPVL LQLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G360500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227659.2 | 6e-58 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A0Q3RGR6 | 1e-56 | A0A0Q3RGR6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G03770.1 | 4e-58 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 9e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G360500.1.p |