PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G360300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 176aa MW: 19213.7 Da PI: 10.0544 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 118 | 140 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H Brast02G360300.1.p 118 HECQICGLGFEMGQALGGHMRRH 140 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.14E-7 | 57 | 79 | No hit | No description |
PROSITE profile | PS50157 | 9.972 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.8E-10 | 57 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.96 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.14E-7 | 113 | 140 | No hit | No description |
Pfam | PF13912 | 3.2E-11 | 117 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.64 | 118 | 145 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.55 | 118 | 140 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 120 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MGVKRERDQE ETAAVVSLSL SLSTDSSTTT TESGSPAAKR ARQRRRSRAA AAAEGEFVCK 60 TCSRAFASFQ ALGGHRTSHL RGRRHGLELG VGVARAIKEH QQRLRRKEEE DQDKKQRHEC 120 QICGLGFEMG QALGGHMRRH REEMLTTGAD RWVVDLGAVA GHGAGEPPVL LELFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G360300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK253045 | 7e-49 | AK253045.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf58a18, mRNA sequence. | |||
GenBank | AK355632 | 7e-49 | AK355632.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023K12. | |||
GenBank | EU408224 | 7e-49 | EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559238.1 | 1e-79 | zinc finger protein ZAT9 | ||||
TrEMBL | I1GLK4 | 3e-78 | I1GLK4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G03790.1 | 4e-79 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G360300.1.p |