PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G333900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LBD | ||||||||
Protein Properties | Length: 146aa MW: 16076.2 Da PI: 7.3415 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.3 | 1.1e-37 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca+dCvlap+fpa++p+++a+v+++FGa nv ++l++lp eer++a++++v eA ra+dPvyG++gvi++lq++++ ++ Brast02G333900.1.p 10 RCAACKYLRRRCARDCVLAPHFPASDPQRYACVQRFFGAGNVARMLQQLPAEERRAAADAMVVEASRRAQDPVYGCAGVIHSLQEEIRAVQ 100 6****************************************************************************************** PP DUF260 92 aelallkee 100 ela++++e Brast02G333900.1.p 101 CELARTRAE 109 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.754 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-36 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MSDTEGNPRR CAACKYLRRR CARDCVLAPH FPASDPQRYA CVQRFFGAGN VARMLQQLPA 60 EERRAAADAM VVEASRRAQD PVYGCAGVIH SLQEEIRAVQ CELARTRAEI AMHQATTAAT 120 SRLPFQPEDD DQQMLIELHG GFLSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-29 | 4 | 110 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-29 | 4 | 110 | 5 | 111 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G333900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559344.1 | 3e-73 | LOB domain-containing protein 24 | ||||
Swissprot | P59468 | 1e-46 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A0Q3J4B9 | 7e-72 | A0A0Q3J4B9_BRADI; Uncharacterized protein | ||||
STRING | OGLUM03G36620.1 | 1e-51 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 5e-49 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G333900.1.p |