PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G331100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 350aa    MW: 36379.5 Da    PI: 10.6282
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G331100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.57.2e-32491732103
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssss 69 
                          g+kdrhsk+ T++g RdRRvRl +++a++f+dLqd+LG+d++sk+++WLl +a +ai+ l+ +                       +   
  Brast02G331100.1.p  49 SGAKDRHSKVVTAKGVRDRRVRLAVPTAIQFYDLQDRLGLDQPSKAVQWLLDAAAHAIDRLPPLdpaafapfpgqatkgggggssasE--- 136
                         689*************************************************************888888888888887775432220... PP

                 TCP  70 asec..eaesssssasnsssg...........kaaksaakskksqks 103
                            +  +++ s  s      +           +  +s  k+k++++ 
  Brast02G331100.1.p 137 ---TttTSKGSDLSL-----StsrvvrrrgssS--SSRDKQKQKRAV 173
                         ...212111222222.....0222333332111..111111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3150212IPR005333Transcription factor, TCP
PROSITE profilePS5136930.34651109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEGGGASGEM AAWGQGAAAR RGGGGAKRGR GGEVVLPASA SRICRARASG AKDRHSKVVT  60
AKGVRDRRVR LAVPTAIQFY DLQDRLGLDQ PSKAVQWLLD AAAHAIDRLP PLDPAAFAPF  120
PGQATKGGGG GSSASETTTT SKGSDLSLST SRVVRRRGSS SSSRDKQKQK RAVTVAASPA  180
QAASFTELLN GDAIAAATAE HIQSWHRQQQ QQQPVSAGFA HPGQKAYAGL RFGNAPPLGM  240
VPVRPFDFPN SAGEITAFSF VQDVLAAASS PAPAPAPAPA GNYSLDFSMS SGFVGGGNSS  300
RGTLQSNSQS QYFPNQLHEL DGPSPPFLYD PTAPLQLWNG FRMEEKSQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2156110155Putative transcription factor PCF6
5zkt_B2e-2156110155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G331100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559357.31e-117transcription factor PCF6
SwissprotQ10CE83e-68PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A0Q3GPA31e-115A0A0Q3GPA3_BRADI; Uncharacterized protein
STRINGBRADI1G06460.11e-116(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-24plastid transcription factor 1