PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G322000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 304aa    MW: 33642.2 Da    PI: 8.4726
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G322000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd  l+ +++q G+g +W + ++++g++R++k+c++rw++yl
  Brast02G322000.1.p 14 KGPWSPEEDATLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding38.82.1e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd +++ +    G++ W+ Ia+ ++ gRt++++k++w++
  Brast02G322000.1.p  69 GGFSEEEDRIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.106962IPR017930Myb domain
SuperFamilySSF466892.99E-2611109IPR009057Homeodomain-like
SMARTSM007172.6E-111364IPR001005SANT/Myb domain
PfamPF002491.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231569IPR009057Homeodomain-like
CDDcd001671.71E-81662No hitNo description
PROSITE profilePS5129422.17463117IPR017930Myb domain
SMARTSM007171.3E-1167115IPR001005SANT/Myb domain
PfamPF002493.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2370117IPR009057Homeodomain-like
CDDcd001672.80E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDATLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIRHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK  120
QSRKDQRQQH FARQGANGGK EEASRDAAGT NGLAAGDYNW HQHAMAMAMP VRPMSGSMVE  180
GNRIGEEVDE SIRKLLFKLG GSPFMSLPPP PVYGETPSFV APSVHTTPLS EGGIQLPALE  240
LDESFHFNQV KLDGLDCFFG MGDQNMRWNE VSPLVCPNNT VASSSKGMQQ YCLVEEPVDL  300
GRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G322000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648050.0AK364805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558752.10.0transcription factor MYB4
TrEMBLI1GMU70.0I1GMU7_BRADI; Uncharacterized protein
STRINGBRADI1G07260.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-80myb domain protein 36