PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G321700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 592aa    MW: 62553.5 Da    PI: 7.2706
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G321700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-12286342155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Brast02G321700.1.p 286 SKFRGVTRHRWTGRYEAHLWDnTCTkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 342
                         79*******************77666554336655.77******************98 PP
2AP248.42.3e-15385436155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Brast02G321700.1.p 385 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 436
                         57****************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-14286351IPR016177DNA-binding domain
PfamPF008471.6E-9286342IPR001471AP2/ERF domain
CDDcd000187.86E-16286351No hitNo description
PROSITE profilePS5103216.95287350IPR001471AP2/ERF domain
SMARTSM003801.5E-21287356IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-11287351IPR001471AP2/ERF domain
PRINTSPR003671.4E-5288299IPR001471AP2/ERF domain
CDDcd000184.25E-23385446No hitNo description
PfamPF008472.9E-10385436IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17385445IPR016177DNA-binding domain
PROSITE profilePS5103219.19386444IPR001471AP2/ERF domain
SMARTSM003802.4E-32386450IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-18386444IPR001471AP2/ERF domain
PRINTSPR003671.4E-5426446IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MTKSGSGGVV RSMSGNGIVD VGSWLGFSLS PHAAVDVGGQ QQHGGLYYPP PMAATSSPSP  60
YYFGGPGNAA AAASNGGYNY YSGISSMPLK SDGSLCIMEA LRRSEQEHHA GAMASPKLEN  120
FLGAGPAMAL SLDSPSYYYG GRGHALDHGP HQLPYAIIPD VYYDAQAHAH AAMVDEQAAM  180
AAAGWMARGA DDGGYDHGNN GAEDGALVPV DIGNQLHPLA LSISSGSQSQ PSSCVTTHAP  240
AYAGAGAGAG EECLAVAVAG KKRGAGQNKQ PVQHRKSIDT FGQRTSKFRG VTRHRWTGRY  300
EAHLWDNTCT KEGQTRKGRQ GGYDMEEKAA RAYDLAALKY WGPATHINFP VEDYQEELEE  360
MKKMSRQEFV AHLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVSGNK DLYLGTFTTQ  420
EEAAEAYDVA AIKFRGLNAV TNFEIARYDV DKIMQSSTLL PGDEARRKTK DAAMAESDVA  480
AGTADWRTST ACGGRGHELM PSEALYALQD MVSVDAAAGA LAQGGSARVS SNASSLATSL  540
SNSREQSPDH HQGGAGLAML RGPLPSWVVS APAPARPGVS VMPMFAAWAD A*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G321700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753181e-171AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757457.20.0LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-147CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2K2DIF90.0A0A2K2DIF9_BRADI; Uncharacterized protein
STRINGBRADI1G07290.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-118AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]