PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G319500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 583aa    MW: 60234.2 Da    PI: 9.3583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G319500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000847192223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         Cp Cgk+F +   +  H+r+H
  Brast02G319500.1.p 71 ICPECGKVFQSDKAMYGHLRSH 92
                        6*******************99 PP
2zf-C2H216.52.4e-05380402123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C+k F+++  L  H+ +H
  Brast02G319500.1.p 380 FVCPRCDKKFPTHQALGGHMASH 402
                         89******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.44E-86992No hitNo description
SMARTSM003550.0077092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2017097IPR007087Zinc finger, C2H2
PfamPF139122.5E-67194IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576674.44E-8375402No hitNo description
SMARTSM003550.0037380402IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494380407IPR007087Zinc finger, C2H2
PfamPF139121.3E-8380403IPR007087Zinc finger, C2H2
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
PfamPF139128.3E-9494518IPR007087Zinc finger, C2H2
SMARTSM003552.4495517IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280497517IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDARAYYLQA AEAAATVTTP AAVARSTAGG EVAARASSYF QAPPPPPPPP PRHGQSLATS  60
WWDGVDLRYL ICPECGKVFQ SDKAMYGHLR SHPAKGYKGA TRPTPNPAGG PVAGAGGANK  120
PRRKVARRRK DRQAAPAGLS IRWPVRAKRG RLPLAPAGAA SSSSSVSTAV LESSFSFGSE  180
EEQAAMILLQ LSGFRGGGTG EPPEEELLPV QQMPVAVAES QIVPQADQLE PVPADHVLDV  240
AVLDASEPEV EQLMIPDHVS AGAGASLPMM PGHVSGGAAL WQADKSAPPV AMEHMFGVIT  300
ESSSLAASIE QAKVDASSSE ARGKKLGKLV VSDAKKPVKK RRLLHDLEPQ AAHHSSRPAE  360
AADALMRARR IPSPASNRSF VCPRCDKKFP THQALGGHMA SHNRASNKYG TDGQQQQHRQ  420
LVAQLAVQSL MASQGGAIPR ANAAAAIACG NTTGTNAAVA SANTATAGTS SGELRGIVLP  480
TPPTAPILLA PPAVYPCSRC ELIFPTGQAL GGHKRRHWLQ DKVRAEAAAT RAAIVAAAAE  540
AIAAATTAVE AGAAGVAASA PAPAAPRGEP RDFDLNEMPS EE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G319500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311827.11e-104uncharacterized protein LOC112269383
TrEMBLA0A0Q3JLR10.0A0A0Q3JLR1_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425