PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G318000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 344aa    MW: 37169.1 Da    PI: 8.0981
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G318000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31218273156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  Brast02G318000.1.p 218 KTRRCWSPELHRQFVAALRQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 273
                         68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.709215275IPR017930Myb domain
SuperFamilySSF466891.59E-16216275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-28216276IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-26218273IPR006447Myb domain, plants
PfamPF002497.8E-7220271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGLDVGEIGA PLDLGLDLKL FVARTAGRLA AAKEAPSMDA CIRGLEEERR KIEVFRRELP  60
LCVRLLAEVI DVMKEEAGKR SEGRDAEDND KRKWMSTAQL WVDNRGSDSA SVVQKEQKKE  120
SALPKPMLLG GAPAPLMAVG FGAMPPPPPP PSSQYFSRED KAAASTEGLP ALPMLSPVVK  180
RPFSPGVDDR LPAPSAKFAT IMPPPGLSLQ SQEQQARKTR RCWSPELHRQ FVAALRQLGG  240
PQVATPKQIR EVMKVDGLTN DEVKSHLQKY RLHNQRGSGS SSSSHSIVLV GDLWPHQEQS  300
SSQSRSPEAE GPLQFSSSGV AVSAATGSDS SEEDDRSDGH SRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13218276260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G318000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229377.10.0transcription factor HHO5
TrEMBLI1GMZ10.0I1GMZ1_BRADI; Uncharacterized protein
STRINGBRADI1G07630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.16e-43G2-like family protein