PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G317700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 273aa    MW: 28019.5 Da    PI: 8.8496
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G317700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0009893115123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ Cg+sF +   L  H  +H
  Brast02G317700.1.p  93 FKCSVCGRSFGSYQALGGHKTSH 115
                         89********9998888887776 PP
2zf-C2H212.50.00046168190123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F++   L  H r+H
  Brast02G317700.1.p 168 HRCSICHKEFPTGQALGGHKRKH 190
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.5793120IPR007087Zinc finger, C2H2
SuperFamilySSF576672.95E-893115No hitNo description
PfamPF139121.0E-1293117IPR007087Zinc finger, C2H2
SMARTSM003550.0293115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576672.95E-8163190No hitNo description
PfamPF139121.3E-12167192IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058168190IPR007087Zinc finger, C2H2
SMARTSM003550.043168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSSMAMEALQ AVTHKEEAAP TSSSSEESGA HGGVLQGWAK RKRSRPRQRS EEENLALCLL  60
MLSRGGGGGQ HRVRAPQPSS SSSPVPLTAA AEFKCSVCGR SFGSYQALGG HKTSHRAKQP  120
SPPPPAAAPL VAPTPAPDTL APPAEPATSS TAASSDAAAA PAASNRVHRC SICHKEFPTG  180
QALGGHKRKH YDGVIGSAAA ASSAELPAAA AESEVGSTGT GAAARAFDLN IPAVPEFVWR  240
PCLKGSSGKM MWEDDEEVQS PLAFKKPRLL TA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G317700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559010.11e-142zinc finger protein 1
SwissprotQ424301e-105ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0Q3JLT71e-138A0A0Q3JLT7_BRADI; Uncharacterized protein
STRINGBRADI1G07660.11e-141(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-29salt tolerance zinc finger