PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G311200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26647.5 Da PI: 7.5018 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88 | 5.3e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss Brast02G311200.1.p 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 59 9***********************************************96 PP | |||||||
2 | K-box | 79.3 | 9.2e-27 | 81 | 173 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + ++ ++++ + e+ Lk+ +e Lq++qR+llGedL +L eL qLe+q+ k l++iRs+K+++ l+++ +l++ke++l+++n +L++k Brast02G311200.1.p 81 VVPTSDEMQNNYLEYMELKAHVEVLQNSQRNLLGEDLAPLGKTELDQLESQVGKTLRQIRSRKTQVQLDELCDLKRKEQMLEDANLTLKRK 171 44677889**********************************************************************************9 PP K-box 98 le 99 l Brast02G311200.1.p 172 LG 173 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.73E-42 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 8.5E-31 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.0E-24 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.158 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS 60 SNMLKTLERY QRYIYASQDA VVPTSDEMQN NYLEYMELKA HVEVLQNSQR NLLGEDLAPL 120 GKTELDQLES QVGKTLRQIR SRKTQVQLDE LCDLKRKEQM LEDANLTLKR KLGEIPVEAE 180 APPQLPWQDD RGVPSHAPLP QPDHFFQALE CNPSLQPSFR GMDVNQPPPA WMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 9e-20 | 1 | 73 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-20 | 1 | 73 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-20 | 1 | 73 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-20 | 1 | 73 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_A | 9e-20 | 1 | 73 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-20 | 1 | 73 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-20 | 1 | 73 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-20 | 1 | 73 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-20 | 1 | 73 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-20 | 1 | 73 | 1 | 72 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G311200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469299 | 0.0 | KF469299.1 Brachypodium distachyon MADS-box transcription factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559391.1 | 1e-168 | MADS-box transcription factor 34-like isoform X1 | ||||
Swissprot | Q6Q9H6 | 1e-119 | MAD34_ORYSJ; MADS-box transcription factor 34 | ||||
TrEMBL | I1GN74 | 1e-167 | I1GN74_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G08326.1 | 1e-167 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13618 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 3e-75 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G311200.1.p |