PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G304400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 374aa    MW: 40363.7 Da    PI: 5.3162
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G304400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.15.7e-33531432101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sws  gnsfvv+d + f++ +Lp+yFkh nf+SFvRQLn+YgF+kv+ ++         weF+ + F +g+ke
  Brast02G304400.1.p  53 FLTKTYDVVSDHSTDTVVSWSVGGNSFVVWDAHAFSRVLLPRYFKHGNFSSFVRQLNTYGFRKVDPDR---------WEFAAEGFLRGQKE 134
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r++
  Brast02G304400.1.p 135 LLKTIRRRR 143
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.5E-3649142IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5549142IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-3249142IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-185376IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-3053142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1891103IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434092116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-18104116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MYPFNGIVKE EEFDFAGAYA AEDGGSPSSW AGAGASELPR PMDGLGEAGP TPFLTKTYDV  60
VSDHSTDTVV SWSVGGNSFV VWDAHAFSRV LLPRYFKHGN FSSFVRQLNT YGFRKVDPDR  120
WEFAAEGFLR GQKELLKTIR RRRPLSSSSS AQQQQGAAAG CLEVGQFGHE GEVHRLKRDK  180
GVLISEVVKL RQEQQATRAQ MQAMEARIVA TEQKQQQMTA FLARAMKSPG FLQMLIDRQQ  240
GHLGQAAQRR SELEDALSKK RRRPIDYLLP RNGDTSAASY GAAAAAAARD YVPGLSDGPA  300
TADGRSGGGE DTESFWMELL SLGLEEKQGG GEGGGSGSGE GRGAETDNEV DDEVDVLVQS  360
LYHLSPGGAH NAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-263414210129Heat shock factor protein 1
5d5v_B2e-263414210129Heat shock factor protein 1
5d5v_D2e-263414210129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G304400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3570221e-177AK357022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1044E17.
GenBankAK3578551e-177AK357855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063H19.
GenBankAK3583801e-177AK358380.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075F04.
GenBankAK3770821e-177AK377082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3147M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559435.10.0heat stress transcription factor A-2a isoform X1
RefseqXP_014751958.10.0heat stress transcription factor A-2a isoform X1
RefseqXP_014751960.10.0heat stress transcription factor A-2a isoform X1
SwissprotQ84MN71e-151HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A0Q3KQ670.0A0A0Q3KQ67_BRADI; Uncharacterized protein
STRINGBRADI1G08890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.18e-78heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]