PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G301400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 390aa    MW: 42060.8 Da    PI: 10.5271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G301400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.4e-31325382359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  Brast02G301400.1.p 325 DEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGDHNHN 382
                         99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-15277321IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.8E-33312382IPR003657WRKY domain
PROSITE profilePS5081129.976318384IPR003657WRKY domain
SuperFamilySSF1182901.44E-26321382IPR003657WRKY domain
SMARTSM007748.9E-38323383IPR003657WRKY domain
PfamPF031062.0E-26325381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEGVEESNRE AVQSCHKVLG LLSNPHGQLV PYKDLKEATG DAVSKFGSIA SKITNGGSSL  60
HGHARFRKKI KKPMPMFDSN LFLESPVVAA AEAAAKTSNP GPNTSLQLFP RYQQMEGSSS  120
KDPVRIPAQF PQRLLLENPV VHSNGLASGR PLQLVQPVSV APPAGTPTPA LPAAHLHFIQ  180
QQQSYQRFQL MHQMNLQSEM MKRGGLGDRG GSTSGGKGVN LKFDSSNGAA SSSRSFLSSL  240
SMDGSIASLD GSRSSRPFQL VSGSQTSSTP ELGNMQRRRC AGKEDGSGRC VTGSRCHCAK  300
KRKLRIRRSI KVPAISDKVA DIPGDEFSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH  360
VERCVDDPAM LIVTYEGDHN HNRAVPQPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-203193821072WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G301400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559879.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLI1GNH30.0I1GNH3_BRADI; Uncharacterized protein
STRINGBRADI1G09170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-48WRKY DNA-binding protein 21