PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G297100.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 225aa    MW: 24049.6 Da    PI: 9.3301
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G297100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.2e-15165201135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Brast02G297100.2.p 165 CHNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 201
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.0E-93267IPR010399Tify domain
PROSITE profilePS5132015.5483267IPR010399Tify domain
PfamPF062005.7E-133466IPR010399Tify domain
PROSITE profilePS5101713.35494136IPR010402CCT domain
PfamPF062037.8E-1694134IPR010402CCT domain
SMARTSM004011.9E-8159213IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-11162211No hitNo description
Gene3DG3DSA:3.30.50.104.2E-14163203IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440165192IPR000679Zinc finger, GATA-type
PfamPF003203.3E-13165201IPR000679Zinc finger, GATA-type
CDDcd002022.37E-12165203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MASEPAADGR DHPPAVAPGD DETAAAAAEA LLSAASEQLT LVYQGEVYVF DPVPPQKVQA  60
VLLVLGGCEV PPGLASMAVP TAYGEKNTTV AAKRVASLMR FREKRKERCF DKKIRYGVRK  120
EVAQKMKRRK GQFAGRADLG DGACASAVCF SRANGEDDHF LETYCHNCGI SSRLTPAMRR  180
GPAGPRSLCN ACGLMWANKG TLRSHLNAPK MTVQHPPNLS KMHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G297100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767000.0AK376700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3132B09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230344.11e-146GATA transcription factor 19 isoform X2
RefseqXP_024317755.11e-146GATA transcription factor 19 isoform X3
SwissprotQ0DNU11e-119GAT19_ORYSJ; GATA transcription factor 19
TrEMBLI1GNL71e-144I1GNL7_BRADI; Uncharacterized protein
STRINGBRADI1G09550.11e-145(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.25e-56ZIM-LIKE 2