PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G289700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 337aa    MW: 36730.6 Da    PI: 6.2689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G289700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11152199355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y++ Lq
  Brast02G289700.1.p 152 QDHILAERKRREKLSERFIALSKIVPGL-----KKMDKASVLGDAIKYVRALQ 199
                         67999***********************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.904149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17151211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-13154203No hitNo description
SMARTSM003534.6E-15155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MATQWFSNMV MEEPSFFHQW QSDATLEQYT EQQIAVAFGQ GELLDHAAAL MQQQQQQQRP  60
RKAAKVNTSW DSCITEQGSP AENSSPPTIL SFGATAFANN RPTHQAHYGP VKQELDAPLV  120
PAKRSYEAAM AMAAEPAAKA VAAPVRPSSQ NQDHILAERK RREKLSERFI ALSKIVPGLK  180
KMDKASVLGD AIKYVRALQE QVKGMEESAR LRRPVEAAVL VKKSQLVPEE DDGSSSSCDE  240
NFEGAMAAEA GLPEIEARMS DRTVLVKIHC ENRKGALVAA LSQVEGFGLT IMNTNVLPFT  300
ASSLDITIMA TAGEDFSLSV KDIVRKLNQA FKSSSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G289700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560380.10.0transcription factor bHLH18
RefseqXP_014753815.10.0transcription factor bHLH18
RefseqXP_024313727.10.0transcription factor bHLH18
TrEMBLI1GNT80.0I1GNT8_BRADI; Uncharacterized protein
STRINGBRADI1G10170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-49bHLH family protein